I'm not sure how to get that information. It does not give me an error message in the terminal. Is there a log I could look at? Is there anything that I need to do prior to the recon-all?
> Hi Chindhuri, > > we'll need to know what the error was that resulted in the non-zero exit > status. > > cheers > Bruce > On Thu, 2 Jun 2011, Chindhuri Selvadurai wrote: > >> Hello, >> >> I am not able to do a regular recon-all of my data on seychelles-- I am >> doing the same thing I used to do. We have started moving our data to a >> different location, however, since this is all new data, I don't see how >> this could be the problem. >> >> I am using freesurfer 4, so I set this var before sourcing the script: >>> setenv USE_STABLE_4_5_0 >>> source /usr/local/freesurfer/stable4 >> >> My subjects_dir is /space/ventzl/36/users/RespMon12C/subjects >> And my command is what it has always been: >> >>> /usr/bin/pbsubmit -q sergeant -l nodes=1:opteron -m chinsel -c >>> 'recon-all >> -s RMOCD025 -all -i >> /cluster/archive/292/siemens/TrioTim-35006-20110504-155020-764000/764000-000004-000001.dcm >> -mail chin...@nmr.mgh.harvard.edu -force' >> >> >> I would appreciate your help! >> >> Thank you, >> Chindhuri S >> >> ---------------------------- Original Message >> ---------------------------- >> Subject: PBS JOB 1380351.seychelles.nmr.mgh.harvard.edu >> From: "adm" <a...@nmr.mgh.harvard.edu> >> Date: Thu, June 2, 2011 2:03 pm >> To: chin...@nmr.mgh.harvard.edu >> -------------------------------------------------------------------------- >> >> PBS Job Id: 1380351.seychelles.nmr.mgh.harvard.edu >> Job Name: pbsjob_14 >> Execution terminated >> Exit_status=1 >> resources_used.cput=00:00:00 >> resources_used.mem=0kb >> resources_used.vmem=0kb >> resources_used.walltime=00:00:01 >> >> >> >> >> Best, >> >> Chindhuri Selvadurai >> >> Psychiatric Neuroimaging, Manoach Lab >> Martinos Center for Biomedical Imaging, MGH >> Phone: (617)726-0307 >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > > Best, Chindhuri Selvadurai Psychiatric Neuroimaging, Manoach Lab Martinos Center for Biomedical Imaging, MGH Phone: (617)726-0307 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
