Hello Bruce, Thank you for your reply. I used recon-all -make all -s subject.
Thanks, Jeff On Thu, Jun 16, 2011 at 3:11 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>wrote: > Hi Jeff > > what command did you run to run them over? > > cheers > Bruce > > On Thu, 16 Jun 2011, Jeff Sadino wrote: > > Hello, >> >> When FS5 came out, I copied over my FS4 reconstructions to my FS5 Subjects >> Directory, and then reran them using the FS5 recon-all stream. This >> updated >> their subject folders with the FS5 changes, but not in as many places as I >> would have thought. For example, on 6 test subjects, I created their FS5 >> folders from FS4 folders that I copied over and then ran the FS5 recon-all >> stream. I also created another copy of their FS5 folders from scratch. >> The >> average difference in their ICV values was -12,000 mm^3. Is it to be >> expected that FS5 reconstructions running on FS4 folders will not include >> all possible improvements? If I want to get an accurate an ICV >> measurement >> as possible, is it advisable to rerun all of my subjects in FS5, starting >> from scratch? >> >> As always, thank you for your valuable assistance! >> Jeff Sadino >> >> > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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