Dear FS experts
We have some problems with the segmentation of hippocampal subfields. The
recon-all finished without problems, but when using GEMS the following error
occured:
nan nan nan
nan nan nan
nan nan nan
Singular: 0
m_BoundingBoxSize: [94, 66,144]
minimalMappedCoordinate: [3.40282e+38, 3.40282e+38,3.40282e+38]
maximalMappedCoordinate: [1.17549e-38, 1.17549e-38,1.17549e-38]
Cropping with min [-1932735280 -1932735280 -1932735280]
and max [-214748367 -214748367 -214748367]
/Applications/freesurfer/bin/kvlSegmentHippocampalSubfields.sh: line 18:
58718 Segmentation fault kvlSegmentWithoutGUI
configurationFileDeformableRegistration.txt
failed to do kvlSegmentWithoutGUI
configurationFileDeformableRegistration.txt
Darwin Reinhard-Drobetzs-iMac.local 10.7.0 Darwin Kernel Version 10.7.0: Sat
Jan 29 15:17:16 PST 2011; root:xnu-1504.9.37~1/RELEASE_I386 i386
recon-all -s 13716099 exited with ERRORS at Fri Jun 24 00:12:30 CEST 2011
I guess the problem occurred due to the NANs in the matrix, isn't it?
Thanks in advance
Regards
Jürgen
----------------------------------------------------------------------------
Jürgen Hänggi, Ph.D.
Division Neuropsychology
Institute of Psychology
University of Zurich
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j.haenggi[at]psychologie.uzh.ch (email)
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