Hi Ryan, what is in transforms/talairach_avi.log?
cheers Bruce On Wed, 29 Jun 2011, Ryan Hutten wrote: > Hi, > > I am currently trying to use the recon-all function. It works fine on an > older computer, but my group is attempting to get freesurfer up and running > on a newer computer. The subject data is > located in a folder called 2645166 as shown in the following command. > > When I run the command: > > recon-all -s 2645166 -all > > I get the following error after the script runs for about a minute: > > ERROR: avi2talxfm failed, see transforms/talairach_avi.log > Linux dell3 2.6.35.6-45.fc14.x86_64 #1 SMP Mon Oct 18 23:57:44 UTC 2010 > x86_64 x86_64 x86_64 GNU/Linux > > > The output of your bugr script gives: > FREESURFER_HOME: /usr/local/freesurfer > > Build stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 > > RedHat release: Fedora release 14 (Laughlin) > > Kernel info: Linux 2.6.35.6-45.fc14.x86_64 x86_64 > > > A brief internet search found nothing regarding this avi2talxfm function. Any > suggestions and/or help would be greatly appreciated. > > Thanks, > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
