Hi Antonella,
for each acquisition you give mri_convert *one* dicom file in that series
and it will figure out the rest. You will then have one volume file per
series. Something like:
mri_convert <one .dcm file in the Ax_PD series) Ax_PD.nii.gz
cheers
Bruce
On Thu, 21 Jul 2011, Antonella Kis wrote:
Good morning Bruce,
Thank you for your answer and yes, I am posting my question to the list.
For all my other subjects I had the MRI data converted by somebody else into
one file .nii.gz for each subject. My question is how I can
convert the MRI data (.dcm) for a new subject in a .nii.gz file? I have
multiple file from MRI: 3DAx_T1, 3DSag_T1, Ax_Flair, Ax_PD, Ax_T2,
BOLD, DTI_15, DTI_32 each of them containing lots of .dcm files. Do I need to
convert all of them? If I give mri_convert one slice in each
dicom series and convert each one to it's own volume how I can further use this
data? Do I get an .nii.gz for each dicom file?
I attached a type of file .nii.gz from another subject so you can see what type
of files I need to get by conversion.
Thank you very much.
Antonella
From: Bruce Fischl <[email protected]>
To: Antonella Kis <[email protected]>
Sent: Wednesday, July 20, 2011 4:12 PM
Subject: Re: dcm conversion to nii
Hi Antonella
can you post this type of question to the list so others can answer? I don't
think you want them in one file as they probably have
different resolution etc... Give mri_convert one slice in each dicom series and
convert each one to it's own volume.
cheers
Bruce
On Wed, 20 Jul 2011, Antonella Kis wrote:
> Dear Bruce,
>
> I have the MRI data (.dcm) for my subject p27 within the following files:
>
> 3DAx_T1, 3DSag_T1, Ax_Flair, Ax_PD, Ax_T2, BOLD, DTI_15, DTI_32.
>
> I would like to convert this data into one file.nii.gz. It will be correct if
I will run:
>
> mri_convert p27 NPI027.nii.gz?
>
> Will FS know to convert based on this statement all my dcm files into one
nii.gz file? If not how should I do it?
>
>
> Many thanks.
> Antonella
>
>
>
>
>
>
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