Hi Antonella, there is not an option for getting the number of vertices because that is not a meaningful quantity. Why do you want it? doug
Antonella Kis wrote: > > Hi Bruce, > > Sorry to bother you again with the same question. Unfortunately I did > not get any reply from the freesurfer list (from Doug and/or Nick as > you mentioned) so I will really appreciate if you can help me with > the same question: > in the aparc stats I have for each segmentation the Number of > Vertices, Surface Area, etc. > I want this data to be exported in a table where in the first ro I > will have the thickness of each segmentation(bankssts , etc) and the > second row I want the Number of Vertices, for each subject. > > > Many thanks, > Antonella > *From:* Bruce Fischl <[email protected]> > *To:* Antonella Kis <[email protected]> > *Sent:* Friday, July 29, 2011 5:24 PM > *Subject:* Re: [Freesurfer] Error with aparcstats2table > > doug and nick can help with that > On Fri, 29 Jul 2011, Antonella Kis wrote: > > > Hi Bruce, > > > > Thanks again for helping. I mean in the aparc stats I have for each > segmentation the Number of Vertices, Surface Area, etc. I want this data > > to be exported in a table where in the first ro I will have the > thickness of each segmentation(bankssts , etc) and the second row I > want the > > Number of Vertices, for each subject. > > > > Thanks. > > Antonella > > > > > _______________________________________________________________________________________________________________________________________________ > > From: Bruce Fischl <[email protected] > <mailto:[email protected]>> > > To: Antonella Kis <[email protected] <mailto:[email protected]>> > > Cc: "[email protected] > <mailto:[email protected]>" > <[email protected] <mailto:[email protected]>> > > Sent: Friday, July 29, 2011 3:18 PM > > Subject: Re: [Freesurfer] Error with aparcstats2table > > > > Hi Antonella, > > > > what do you mean by no. of vertices? The total # in the surface? You > can get that with mri_info. It's loosely related to surface area, but not > > that interested a quantity. > > > > Bruce > > > > > > On Fri, 29 Jul 2011, Antonella Kis wrote: > > > > > Hello everyone, > > > > > > > > > I was trying to create a table with my statistical results (the > cortical thickness and the number of vertices) and I was running: > > > > > > aparcstats2table --hemi lh --subjects bert NPI001 --meas thickness > -t lh.aparcstas.THICKNESS.txt > > > > > > When I tried to also get the number of vertices a table by > running: aparcstats2table --hemi lh --subjects bert NPI001 --meas > vertices -t > > > lh.aparcstas.VERTICES.txt I got the following error: > > > > > > aparcstats2table: error: option --measure: invalid choice: > 'Voxels' (choose from 'area', 'volume', 'thickness', 'thicknessstd', > 'meancurv') > > > > > > I Why I don't have an option for the no. of vertices? > > > > > > Can I get a table with both data: cortical thickness and no. of > vertices? > > > > > > Many thanks, > > > Antonella > > > > > > > > > > > > > > > > > > The information in this e-mail is intended only for the person to > whom it is > > addressed. If you believe this e-mail was sent to you in error and > the e-mail > > contains patient information, please contact the Partners Compliance > HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > > but does not contain patient information, please contact the sender > and properly > > dispose of the e-mail. > > > > > > > > > > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
