It was probably the initialization that failed. To test this, run fslregister (very similar command line to bbregister). If that does not look good, then it is an init problem. If these were acquired in the same session, then you can try using --init-header. If you have spm installed, you can try --init-spm. The spm solution requires that SPM be set up properly for this program, which is not always so easy. It also requires matlab.
doug francesca strappini wrote: > Thanks a lot! > I tried the registration with bbregister but unfortunately when I > checked the result the functional volume was very distant from the > target. > Could I tried something else to improve the registration? > > I typed: > > bbregister --s subject --mov name_file.nii --reg register.dat > --init-fsl --bold > > > Thanks again! > > Francesca -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
