Hi Wil
sorry, we don't have anything for that yet, although we are actively
working on it.
cheers
Bruce
On Wed, 24 Aug 2011, Irwin, William wrote:
Hello-
In the FreeSurferColorLUT.txt,v 1.70.2.1 2011/05/02 file, there are labels for
sub-regions of interest. For example amygdala and brainstem.
How does one go about extracting the volumes for these regions?
Thank you in advance,
Wil
#No. Label Name: R G B A
7001 Lateral-nucleus 72 132 181 0
7002 Basolateral-nucleus 243 243 243 0
7003 Basal-nucleus 207 63 79 0
7004 Centromedial-nucleus 121 20 135 0
7005 Central-nucleus 197 60 248 0
7006 Medial-nucleus 2 149 2 0
7007 Cortical-nucleus 221 249 166 0
7008 Accessory-Basal-nucleus 232 146 35 0
7009 Corticoamygdaloid-transitio 20 60 120 0
7010 Anterior-amygdaloid-area-AAA 250 250 0 0
7011 Fusion-amygdala-HP-FAH 122 187 222 0
7012 Hippocampal-amygdala-transition-HATA 237 12 177 0
7013 Endopiriform-nucleus 10 49 255 0
7014 Lateral-nucleus-olfactory-tract 205 184 144 0
7015 Paralaminar-nucleus 45 205 165 0
7016 Intercalated-nucleus 117 160 175 0
7017 Prepiriform-cortex 221 217 21 0
7018 Periamygdaloid-cortex 20 60 120 0
7019 Envelope-Amygdala 141 21 100 0
7020 Extranuclear-Amydala 225 140 141 0
# Label names and colors for Brainstem consituents
# No. Label Name: R G B A
170 brainstem 119 159 176 0
171 DCG 119 0 176 0
172 Vermis 119 100 176 0
173 Midbrain 119 200 176 0
174 Pons 119 159 100 0
175 Medulla 119 159 200 0
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