We here at the University of Wisconsin, Madison are constrained to run only compiled Matlab on our clusters. We have a number of groups that use freesurfer on I have just completed creating some workflows to do longitudinal, -localGI and a basic processing using autorecon1,2 and three.
These run in our center on execute nodes not requiring a license since they use the compiled version and a runtime. For the -localGI: Besides the basics of running a compiled matlab in terms of setting up the environment right, I had to change mris_compute_lgi and some input mappings in some of the freesurfer matlab toolbox. My changes had all the args coming into matlab as strings and I had to find the trouble ones(10 or so) and convert them to the proper expected type . This allows thousands of jobs to be analyzed at once on our cluster. Anyone willing to take charge of these changes back at Harvard. It would be great to have this variation available to others. -- Bill Taylor 608-263-2656 (cell 608-219-4430) Center for High Throughput Computing(CHTC) Condor project Computer Sciences University of Wisconsin, Madison _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
