Thanks Allison, that's great! Torsten
On Tue, 2011-10-04 at 09:40 -0400, Allison Stevens wrote: > Hi Torsten, > If you run: > recon-all -all -clean-bm -s subjid > > This should trask all the edits you made to the brainmask volume and make > a new one to replace that. It will keep all your other edits. > Allison > > On Tue, 4 Oct 2011, Torsten Ruest wrote: > > > to correct the pial surface for incorrect assignment of head tissue, I > > edit the brainmask.mgz. Hope that's correct... > > > > Thanks, > > > > Torsten > > > > On Tue, 2011-10-04 at 09:07 -0400, Bruce Fischl wrote: > >> and which volume are you editing? > >> On Tue, 4 Oct 2011, Torsten Ruest wrote: > >> > >>> Hi Bruce, > >>> > >>> thanks for your quick reply. No I am editing using the following > >>> command: > >>> > >>> tkmedit PARTICIPANT_FOLDER wm.mgz rh.white -aux brainmask.mgz > >>> -aux-surface lh.white > >>> > >>> Thanks, > >>> > >>> Torsten > >>> > >>> On Mon, 2011-10-03 at 11:22 -0400, Bruce Fischl wrote: > >>>> what pial edits to you want to undo specifically? Was it just edits to > >>>> the > >>>> brain.finalsurfs.mgz volume? > >>>> > >>>> > >>>> On Mon, 3 Oct 2011, Torsten Ruest wrote: > >>>> > >>>>> Hi there, > >>>>> > >>>>> I think there is an option to remove all edits that have been > >>>>> incorporated using recon2 -clean. > >>>>> > >>>>> Is there a chance that I can selectively undo all incorporated pial > >>>>> edits (ie that have been incorporated by running "recon-all -subject > >>>>> TEST -autorecon2 > TEST-2.log")? > >>>>> > >>>>> Thanks very much in advance, > >>>>> > >>>>> Torsten > >>>>> > >>>>> > >>>>> > >>>>> _______________________________________________ > >>>>> Freesurfer mailing list > >>>>> Freesurfer@nmr.mgh.harvard.edu > >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >>>>> > >>>>> > >>>>> > >>>> > >>>> > >>>> The information in this e-mail is intended only for the person to whom > >>>> it is > >>>> addressed. If you believe this e-mail was sent to you in error and the > >>>> e-mail > >>>> contains patient information, please contact the Partners Compliance > >>>> HelpLine at > >>>> http://www.partners.org/complianceline . If the e-mail was sent to you > >>>> in error > >>>> but does not contain patient information, please contact the sender and > >>>> properly > >>>> dispose of the e-mail. > >>>> > >>> > >>> > >>> > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
