You will need to run mri_aparc2aseg specifying your lobe annotation as the input (this parcellates WM based on proximity to the annotation). Then run mri_segstats on the output of that to get the WM volumes for each lobe. doug
Gonzalo Rojas Costa wrote: > Hi Douglas: > > I was testing the commands that you sent me, but I only got the > cortical volume, but I need the cortical+WM volume of each lobule... > How can I do it ?... > > Sincerely, > > > Gonzalo Rojas Costa > > > > On Mon, Sep 26, 2011 at 11:01 AM, Douglas N Greve > <gr...@nmr.mgh.harvard.edu> wrote: > >> You can run mri_annotation2label with --lobesStrict to get a lobe >> annotation. If that definition of "lobes" is good for you, then you can run >> mris_anatomical_stats to get the volume for each lobe. >> doug >> > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
