Hi Inge I think this is a question for Koen (ccd)
cheers Bruce On Fri, 14 Oct 2011, Inge Knudson wrote: > Hi Bruce et al., > > I have a problem with the -hippo-subfields segmentation not creating some > files for the left side when I run it on our Linux box located at the > Martinos Center, with Freesurfer sourced to > /usr/local/freesurfer/nmr-stable51-env. Specifically, it runs to apparent > completion and exits without error, but it does not create these three .mgz > files: > posterior_Left-Cerebral-Cortex.mgz > posterior_Left-Cerebral-White-Matter.mgz > posterior_Left-Hippocampus.mgz > > All the other posterior_*.mgz files are created, however. It is only these > same 3 that are missing every time. The hippo-subfields.log file also does > not get created. > This happens whether I run -hippo-subfields as part of the recon-all -all > process, or as a stand-alone: > recon-all -s mysubject -hippo-subfields > > The Freesurfer build stamp is > freesurfer-Linux-centos4_x86_64-stable-v5.1.0-20110514 > > If I copy the subject's directory over to my iMac (OS 10.6.8) which has its > own standalone copy of Freesurfer 5.1 installed, and run the same command > line there, it runs fine. All the files are created, including the > hippo-subfields.log. The build stamp on the iMac is > freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 > > Thank you, > Inge > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
