1. Currently trac-all uses only the MNI template, not CVS. So yes, all steps apply.
2. See the tracula tutorial, section "outputs from tracula", to see where to find the MNI-space outputs. 3. What clusters are you talking about? Do you want to do a voxel-based analysis? If so, why are you using tracula? Go through the tracula tutorial and read the tracula paper below to understand what tracula does: http://frontiersin.org/neuroinformatics/10.3389/fninf.2011.00023/abstract On Fri, 11 Nov 2011, Antonella Kis wrote:
Hi, I am trying to do a DTI Group Analysis study using a MNI152 standard space for registration. 1). I wonder in case I want to use MNI 152 and not CVS space using TRACULA if I have to follow all the steps starting Setting Up a Configuration File to run Tracula and then to continue with the following three steps in the TRACULA processing stream (which is called by the command trac-all): * Pre-processing * FSL's bedpostX * Reconstructing white-matter (WM) pathways 2). Can I check the registration for individual subjects to see if it worked well or not on the MNI 152 template? 3) How can I see if there are clusters that survives to multiple comparison in group 1 (controls) versus group 2 (patients) without and covariant (not gender, not age). Can I get a txt file as output for this clusters? Thank you. Antonella
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