Hi Maria, Yes, you are editing aseg.mgz. After saving the segmentation, you should run <recon-all -s subject_name -autorecon2 -autorecon3>. If you also added some control points, then you should run <recon-all -s subject_name -autorecon2-cp -autorecon3>
Best wishes, Tanja. On Fri, Nov 25, 2011 at 10:40 PM, Maria Jalbrzikowski <mjalbrzikow...@gmail.com> wrote: > > Hi, > > I am a relatively new user of Freesurfer and have a couple questions. > I have gone through the tutorials and I am now at the point where I check > the segmentation. > If I open my subject in tkemdit > (tkmedit your_subject_name brainmask.mgz -surfs -aseg) and use the edit the > segmentation and then press "save segmentation", I am editing the aseg.mgz > file, correct? After doing that, what parts of recon-all would I need to > run again? > Thanks, > Maria > -- > Maria Jalbrzikowski, M.A. > University of California, Los Angeles > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
