The problem is apparently that the Xh.aparc.a2009s.annot wasn't created. Look in scripts/recon-all.log and make sure that the section "Cortical Parc 2" is present, and if it is, look for clues as to why the .annot wasn't created.
cheers, -MH On Thu, 2011-12-29 at 16:03 +0000, LAOUCHEDI MAKHLOUF wrote: > hi everyone > i run recon-all on 27 subjects using the 5.1 > version, and i don't find aparc.a2009s+aseg.mgz neither > lh.aparc.a2009s.annot so i can't use the command mri_aparc2aseg > ( mri_aparc2aseg --s subject --a2009s). what must i do to have > aparc.a2009s+aseg.mgz. > > thanks > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
