Hi Gabriel, have you asked the slicer folks about this?
Bruce On Wed, 18 Jan 2012, Gabriel Gonzalez Escamilla wrote: > Dear FS experts, > > I'm trying to render the surfaces and volumetric data from FS into > 3D-slicer, Because I've read on the net that is compatible with FS surfs and > images; but something seem to be not right, I'm sending you an attached jpg > with my problem. > > The thing is that I've load the ?h.pial surface (gary render) and the > rawavg.mgz (gray-scale) and compare them with the original NIfTi images > (green render) which I've obtain from the reconstruction of the dicom files; > and is the image I'd used in FS to create the 001.mgz image as input for the > recon-all processes. > > As you may see in the attached image, each time I do load the images they > appear to be in different spaces, but they're supposed to be in the subjects > native space, > apparentely the mismatching between the two images (in 3D slicer) starts > from the conversion from NIfTI to the 001.mgz image; Because when I load it > into slicer is in the same space as the rawavg.mgz and the other mgz images > Is it a problem when images loading in slicer or could I've been doing > something wrong? > > And I don't really have idea for the mismatching between the surfaces and > the mgz images. > > I have created a fiber vtk file in another program, and the fibers load in > the same space as the NIfTI volume, which makes me think that the NIfTI has > been loaded correctly. > > Bests, > Gabriel. > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
