Maybe you can apply the transform using mri_convert or mri_vol2vol created during autorecon1. Is that what you are looking for?
http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable On Feb 22, 2012, at 11:26 AM, Long <longspac...@gmail.com> wrote: > Dear all, > > I had EPI images and T1 image and the EPI images are already co-registered to > T1 image in their native space. I also run 'recon' on T1 image. I'd like to > try surface-based spatial normalization in FreeSurfer, so how can I only do > the spatial normalization of EPI images in FreeSurfer, i.e., transform EPI > images from native space to mni152 space, then I could have surface-based > normalized EPI images. > > Best, > Xiangyu > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
