yes, this is a know issue. It has been fixed for the next version, but you can upload a fixed linux program from ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_label2vol copy this to $FREESURFER_HOME/bin doug
David Grayson wrote: > Hi, > > I am noticing that when I use ‘mri_label2vol --annot’ it is not creating the > final label from the color table file. I tried using the --thresh 1 option, > but that didn't work either. i.e... > > mri_label2vol --annot lh.custom.annot --temp ../mri/orig.mgz --o > custom_lh.nii.gz --subject FREESURFER --hemi lh --identity > > The last index is no where to be found in the custom_lh.nii.gz. But the other > indices look OK. > > Has anyone encountered this before, and know what to do? Thanks very much! > > David > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
