Hi Tyler and others using the inter-hemispheric analysis. I have made some modifications to this method since I last released it in Aug. I found a slight bug in the process which I have fixed. I've also created cached tables for multiple comparisons correction. The instructions for installing are below. I doubt that the fix mentioned above will change your results much. However, if you want to use the tables, you will should to re-run everything.
Make sure to install ALL of the files below. DO NOT do a partial installation. Note that there is a new average subject. Make sure to delete the old one. doug Download these files ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/surfreg ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/xhemireg ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mris_preproc ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/fsaverage_sym.tar.gz ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/fsaverage_sym.mcc.tar.gz ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_convert.linux Copy surfreg, xhemireg, mris_preproc into $FREESURFER_HOME/bin Copy mri_convert.linux into $FREESURFER_HOME/bin/mri_convert # Untar fsaverage_sym.tar.gz into your $SUBJECTS_DIR cd $SUBJECTS_DIR tar xvfz fsaverage_sym.tar.gz # Untar fsaverage_sym.mcc.tar.gz into $FREESURFER_HOME/average/mult-comp-cor/ cd $FREESURFER_HOME/average/mult-comp-cor/ tar xvfz fsaverage_sym.mcc.tar.gz Tyler Manning wrote: > Hi, > > I am comparing asymmetries in fmri activation, and have been following > your instructions as per > https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-August/019869.html > , but when it comes to the multiple correction with mri_glmfit-sim I > get an error that the --subject-override command was not found. The > version currently installed on the machine is 1.36.2.1 from 2011/03/28 > and I can't find a download for the newer version mentioned in the > email above. Has one been uploaded? > > Many thanks, > Tyler Manning > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
