Hi, recon-all takes an anatomical volume as input, not a functional one. You can give it any slice that is in the correct series (just specify one) and it will find the others.
cheers Bruce On Tue, 6 Mar 2012, bowan...@mail.ustc.edu.cn wrote: > Dear all > I just want to ask a sample question.What's the best number of the parameter of 'recon-all' , -i invol1 -i invol2.That is, how many slices should we use?If the invol1 is the fist slice of the fMRI series or any one of the data? > Yours > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
