I ran the surfaces a couple of weeks ago, and I ran all of the fsfast steps today. I used the -force flag for preproc-sess, mkanalysis-sess, and selxavg3-sess to make sure that all steps were run rather than leaving old files in place.
--Greg On Mar 8, 2012, at 2:06 PM, Douglas N Greve wrote: > Did you happen to change the surface for your subject between the time you > ran preprocessing and the time you ran fieldsign-sess? It looks like the > number of vertices changed. > doug > > Greg Burgess wrote: >> Hi freesurfers, >> >> I'm getting an error that I don't know how to track down. >> Running the following command: >> fieldsign-sess -a rtopy.self.lh -sphere -s CP10021_v5 >> >> I get the following error: >> reading colortable from annotation file... >> colortable with 36 entries read (originally >> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) >> Complex >> Reshaping 7208 >> Ripping Zeros >> ERROR: MRISripZeros(): dimension mismatch >> ERROR: MRIScopyMRI: Surf/Src dimension mismatch. >> ERROR: MRIScopyMRI: Surf/Src dimension mismatch. >> ERROR: MRIScopyMRI: Surf/Src dimension mismatch. >> ERROR: MRIScopyMRI: Surf/Src dimension mismatch. >> Rot (rad): 0 0 >> surfer: compute_fieldsign() >> >> As suggested in previous posts, I've tried running: >> recon-all -s CP10021_v5 -make all -dontrun >> recon-all -vno-check -s CP10021_v5 >> but no issues are reported, and I can't find any issues in the log files or >> output. >> >> Can anyone suggest a next step? >> >> Thanks, >> --Greg >> >> ____________________________________________________________________ >> Greg Burgess, Ph.D. >> Staff Scientist, Human Connectome Project >> Washington University School of Medicine >> Department of Anatomy and Neurobiology >> Email: burge...@pcg.wustl.edu >> >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
