Fatima, Do the aseg.stats files exist? The second error concerning vtk will go away once the first error (the missing aseg.stats file) is fixed (run recon-all -s 240 -segstats).
Nick On Fri, 2012-03-30 at 12:39 +0200, Ahmed, F, Me wrote: > Hello, > > I got this error while trying to generate the stats table on qdec on > my own data: > > What I don’t understand is for the 1st error, where it says it can’t > locate aseg.stats for 240, the aseg.stats file is in subject 240’s > file. > But what is the reason for the 2nd error? > > asegstats2table --meas volume > --tablefile > /mnt/hgfs/VBM/freesurfer_EONCS/EONCS/PTSD_Qdec_Analysis/qdec/stats_tables/aseg.volume.stats.dat > --subjects 240 239 165 178 168 169 176 170 177 180 181 187 199 203 206 151 > 210 208 209 211 212 242 215 219 220 226 229 244 243 249 254 248 255 250 252 > 246 261 262 265 268 273 279 280 282 283 291 292 294 297 298 299 300 289 > Building the table.. > SUBJECTS_DIR : /mnt/hgfs/VBM/freesurfer_EONCS/EONCS/PTSD_Qdec_Analysis > ERROR: cannot > find > /mnt/hgfs/VBM/freesurfer_EONCS/EONCS/PTSD_Qdec_Analysis/240/stats/aseg.stats > Use --skip flag if you want to continue in such cases > ERROR: > In /usr/pubsw/packages/KWWidgets/CVS/src/KWWidgets/vtkKWTkUtilities.cxx, line > 230 > vtkKWQdecApp (0xbc320e8): > Script: > vtkTemp3 GenerateStatsDataTables > Returned Error on line 1: > > Any help would be greatly appreciated. > > Thanks, > Fatima > > > > ________________________________ > E-pos vrywaringsklousule > > Hierdie e-pos mag vertroulike inligting bevat en mag regtens > geprivilegeerd wees en is slegs bedoel vir die persoon aan wie dit > geadresseer is. Indien u nie die bedoelde ontvanger is nie, word u > hiermee in kennis gestel dat u hierdie dokument geensins mag gebruik, > versprei of kopieer nie. Stel ook asseblief die sender onmiddellik per > telefoon in kennis en vee die e-pos uit. Die Universiteit aanvaar nie > aanspreeklikheid vir enige skade, verlies of uitgawe wat voortspruit > uit hierdie e-pos en/of die oopmaak van enige lêers aangeheg by > hierdie e-pos nie. > > E-mail disclaimer > > This e-mail may contain confidential information and may be legally > privileged and is intended only for the person to whom it is > addressed. If you are not the intended recipient, you are notified > that you may not use, distribute or copy this document in any manner > whatsoever. Kindly also notify the sender immediately by telephone, > and delete the e-mail. The University does not accept liability for > any damage, loss or expense arising from this e-mail and/or accessing > any files attached to this e-mail. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
