Hi David, You can send us the case via ftp or filedrop. See wiki page below.
https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange -Louis On Mon, 9 Apr 2012, Tate, David Franklin wrote: > Thanks Allison for your answer. We posted this on the list serve and saw it > there for about one day. Then when we tried to follow up a few days later, > it did not show up on the list serve. I was a little worried that I had > posted something wrong. > > Yes, I could upload a case for you. Just let me know where you would like me > to send it. > > In the second edit question, we were concerned about the pial surfaces in the > inter hemispheric fissure. There are several place where the surface > deviates into the gray matter at weird angles and persists for several slices. > > Thanks for any help you can provide on this. > > David > > > David F. Tate, Ph.D. > Research Neuropsychologist > Henry Jackson Foundation Contractor > Defense and Veteran Brain Injury Centers > San Antonio Military Medical Center > San Antonio, TX > > Assistant Professor of Radiology > Research Imaging Institute > University of Texas Health Science Center San Antonio > 8403 Floyd Curl Drive > San Antonio, TX 78249 > > 210.567.8109 > > [email protected]<mailto:[email protected]> > > > > On Apr 6, 2012, at 10:24 AM, Allison Stevens Player wrote: > > Hi David, > You can edit in freeview or in tkmedit, it doesn't matter which one. The > strange lines in the hippocampus are normal. The surfaces aren't used to > measure subcortical volume and so they are not doing anything meaninful in > those areas and may look a little strange. > > I'm not so sure what you're trying to do with the second edit. If you send me > the case, I can take a look. > Allison > > We have been using the version 5.1 to do some longitudinal processing on a > Mac computer using Lion. > > Our template results have several areas that concern us and we are won dering > the best approach for editing. We believe it is edit the pial surfaces in > tkmedit. However, the tutorials are a bit confusing as they see m to contain > slightly different steps and in neither place do they provide the kind of > detail (i.e., which editi ng tool to use in tkmedit and if there are any > configuration changes needed ). > > We have posted the following screen captures. The first shows is from free > view and shows that strange lines in the hippocampus. The last two show > attempts at editing but in the posterior part of the brain in the inter > hemispheric fissure. > > Any help would be greatly appreciated. > > Thanks, > > <Screen Shot 2012-03-02 at 3.41.56 PM.png> > <Screen Shot 2012-03-05 at 3.15.16 PM.png> > <Screen Shot 2012-03-05 at 3.15.01 PM.png> > _______________________________________________ > > > Freesurfer mailing list > > > [email protected]<mailto:[email protected]> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
