I have not done any manual interventions. I would like to re-run recon-all with different expert options in mri_normalize, and -skullstrip, and -mprage, and wanted be sure that my changes would be reflected in the downstream output. -
On Fri, Apr 20, 2012 at 12:52 PM, Joshua Lee <jki...@ucdavis.edu> wrote: > If I were to want to re-run a recon-all completely fresh on a subject, > what do I need to do aside from creating a new subject directory? > > I had previously thought that by adding the -all flag, all old files would > be over written (i.e. overwrite with a new brainmask.mgz). I want > everything fresh. > Does the -clean flag do it all? > Thanks > Josh >
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