Hi Pawel
no, sorry, you need to segment everything to get hippocampal volumes. You
can stop after autorecon2 and not run 3, which will save you a bit of time,
but you are probably better off just running them all normally.
cheers
Bruce
On Mon, 23 Apr 2012, Pawe? Dembi?ski wrote:
Hi,
I'm currently doing a project for my neuroscience course. I've decided to
compare automatic segmentation methods (comparing hippocampus volumes)
(using Freesurfer and FIRST). My question is, whether there is a set of
commands in Freesurfer which will enable me to segment only hippocampus. I'm
only intrested in volumes, nothing else. I've noticed that recon-all takes a
lot of time and been wandering if there is a faster way.
Pawel
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