hmmm, something seems badly wrong here. You shouldn't have any vertex
indices over 150K or so. If you load that annot file onto the surface in
tksurfer does it look right? Does tksurfer complain when you try to load
it?
On Fri, 18 May 2012, Inês Violante wrote:
Hi,
It repeats this several times and
MRISreadAnnotationIntoArray: vertex index out of range: 775162420
i=2E340A34, in_array_size=157940
annot file: CS/label/lh.aparc.annot
MRISreadAnnotationIntoArray: vertex index out of range: 775162420
i=2E340A34, in_array_size=157940
annot file: CS/label/lh.aparc.annot
MRISreadAnnotationIntoArray: vertex index out of range: 775162420
i=2E340A34, in_array_size=157940
annot file: CS/label/lh.aparc.annot
(...)
ERROR: Too many out-of-range vertex indices in MRISreadAnnotationIntoArray!
On Fri, May 18, 2012 at 4:53 PM, Douglas N Greve
<gr...@nmr.mgh.harvard.edu> wrote:
Hi Ines, this is a good thing to post to the list since there are others
that might know better than me. Also, please include the full terminal
output.
thanks
doug
On 05/18/2012 11:51 AM, Inês Violante wrote:
Thanks a lot!
Just another question:
I get this message for one of my subjects using the previous command:
ERROR: Too many out-of-range vertex indices in
MRISreadAnnotationIntoArray!
I must have done something wrong. Is there a way to correct this
without having to run the whole recon-all again?
All the best,
ines
On Fri, May 18, 2012 at 4:46 PM, Douglas N Greve
<gr...@nmr.mgh.harvard.edu> wrote:
yes, but you might want to change the name of the stats file so that you
don't overwrite the one that is there
doug
On 05/18/2012 11:39 AM, In?s Violante wrote:
Thank you.
I've tried this command:
mris_anatomical_stats -f AC/stats/lh.aparc.stats -b -a
AC/label/lh.aparc.annot -c ./aparc.annot.ctab AC lh pial
Would this be appropriate?
ines
On Fri, May 18, 2012 at 4:32 PM, Douglas N Greve
<gr...@nmr.mgh.harvard.edu> wrote:
And you can get the full command line from the
$subject/scripts/recon-all.log file
doug
On 05/18/2012 10:41 AM, Michael Harms wrote:
The last argument of mris_anatomical_stats allows you to specify the
surface to use (pial in your case)
cheers,
-MH
NAME
mris_anatomical_stats
SYNOPSIS
mris_anatomical_stats [options]<subjectname> <hemi>
[<surfacename>]
On Fri, 2012-05-18 at 15:18 +0100, In?s Violante wrote:
Hi,
I need to know the surface area of the structures in the aparc file
but I want to obtain this measurement from the pial surface and not
the white matter surface.
How can I do that?
Thank you a lot for your help.
ines
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
_______________________________________________
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https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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The information in this e-mail is intended only for the person to whom it is
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