so it seems that i ran make_average_volume which does have a --no-aseg flag
make_average_subject really just runs 2 other commands make_average_surface and make_average_volume. bruce the reason i did this is that mike was running a `super` average, i.e. the average subject of 2 different syudies, i.e. ave_study1, ave_study2 and he was running make_average_subject --subjects ave_study1 ave_study2 --out superave. we were doing this so we could map labels from one study to another and we were getting an error in the log file from make_average_volume that indicated it was having a problem with the aseg after the make_average_surface had already finished without error. really we could just skip it i think as we are not actually doing anything with the average volume. greg On 06/04/12, Bruce Fischl wrote: > Hi Michael > > a couple of typos. It should be "make_average_subject" (note no "s"), and it > should be --subjects (note the ending "s"). I also don't see a flag named > --no-aseg, which I think is why it's being included as a subject. What are > you trying to do? > > cheers > Bruce > > On Mon, 4 Jun 2012, michael kruepke wrote: > > >Hi all - > >Having a bit of an issue with trying to run a make_average with the flag > >--no-aseg. When written > > > >make_average_subjects --subject subject1 subject2 --no-aseg --out > >superaverage > > > >the propt runs as if --no-aseg and --out superaverage are subjects i wish to > >average in with subjects1 and subject2. This is obviously and issue, hoping > >someone might have an idea of a solution. I have tried moving these flags to > >somewhere else in the prompt seeing if that would solve it, no luck there. > > > >Best- > >Michael > > > >-- > >Michael D. Kruepke > >PhD - University of Illinois at Urbana-Champaign > >BA - Psych - University of Wisconsin-Madison > >mdkrue...@gmail.com > >(262)-483-7449 > > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
