Can you send us your configuration file (mytracula.conf) and log file (it should be under scripts/trac-all.log). I can take a look.
Priti > Hi, > > I am trying to run the last step of TRACULA. I used the command line: > > % trac-all -path -c mytracula.conf > > Here is all the info I got on the screen: > > INFO: SUBJECTS_DIR is /home/sata2/FreeSurfer/Subjects.Verio > INFO: Diffusion root is /home/xkang/DTI/ > Actual FREESURFER_HOME /home/local/freesurfer-v510 > trac-paths -c /home/xkang/DTI//S0006/scripts/dmrirc.local -log > /home/xkang/DTI//S0006/scripts/trac-all.log -cmd > /home/xkang/DTI//S0006/scripts/trac-all.cmd > #------------------------------------- > /usr/local/freesurfer/bin/trac-paths > #------------------------------------- > #@# Path reconstruction Fri Jun 15 10:47:44 PDT 2012 > #------------------------------------- > trac-paths finished without error at Fri Jun 15 10:47:44 PDT 2012 > > > > I didn't see "dpath" under the subject's directory. Seems nothing has > been done. I already ran the "trac-all -prep" and "trac-all -bedp". I > have the directories dlable, dmri and dmir.bedpostX, but not dpath. Can > any body help where the problems are? > > I use DTI images in NIFTI format and the resolution is 2x2x2, which is > not the same as that of the FreeSurfer orig.mgz. Probably this is fine. > > Thanks. > > XJ Kang > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
