Hi Chris, I don't think there is such a tool. One thing you can do is to use the aparc+aseg.mgz as the source instead of the lh and rh surfaces separately. This might solve all of your problems. doug
On 07/06/2012 12:02 PM, Christopher Bell wrote: > > Hello Freesurfers, > > > I have developed a pipeline that uses mri_label2vol to take freesurfer > parcellations to > native fmri space, and uses dilation (within mri_label2vol) to make > the ROIs larger since our resolution is only > 3.5x3.5x4 we would end up with only a few voxels for some ROIs due to > large voxel > size and partial voluming wihout the dilation. However, since the lh > and rh are done > separately by mri_label2vol, I now have overlap on the midline and > have to go through a bunch > of masking steps to eliminate it. > > My question is; is there a tool that will take both lh/rh > parcellations to a new coordinate > system, do dilation, and most importantly control for lh/rh overlap? > Or any other > similar suggestions. Thanks! > > Basically I am looking to rework my pipeline, and it seems I should be > able > to find a more parsimonious solution, than my "Rube Goldberg" approach. > > Chris > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
