so I can simply label the whole surface, if I'm confident? I don't know much about labels and how to make them (I use caret mainly, since I do monkey). I presume it's what one would imagine, and there's a way to figure it out.
On 20 July 2012 19:36, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Colin > > the hires label is meant to be the portion of the surface that is far > enough into the FOV/coil that you are confident of the data there. > > cheers > Bruce > > > On Fri, 20 Jul 2012, Colin Reveley wrote: > > Hi - >> I'm using freesurfer with an ex-vivo MTR of a monkey, at 0.25mm. >> unfortunately the data doesn't fit into 256^3, and anyway things are much >> faster, and decent results are to be had by downsampling to 0.5mm. >> >> I did notice this mris_refine_surfaces. That looked great. I can fit >> 0.32mm >> into 256^3, so I did that, and called it 0.64mm, and treated it the same >> way >> I treated the 0.5mm (nu_correct etc etc) to get my "hires.mgz" for >> mris_refine_surfaces >> >> then I noticed mris_refine_surfaces wants ?h_hires.label as well. >> >> a) how would I make ?h_hires.label >> b) does my hires.mgz even have to be 256^3? If not, I could use the actual >> 250um data to refine the surface, and that would be nice. >> c) I don't suppose there would be any chance of not only using a hi res >> volume to refine the surfaces, but also upsampling the surfaces too? There >> is a reason I might want them upsampled. It would be nice for the ?h.white >> mesh to sort of approximately have a node for each voxel face. It's to do >> with more accurately mapping certain data in CARET later on. >> >> I'd settle for just how to make ?h_hires.label and use >> mris_refine_surfaces >> though :) >> >> cheers, >> >> Colin >> >> >> > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. > If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
