On 09/26/2012 12:36 AM, Darren Gitelman wrote: > Hi > > I have 3 questions: > > 1) Does it affect the stats (or does it just affect the display) if I > use the fsaverage brain vs. the average of my subjects brains when > running mris_preproc or when simulating the cluster statistics using > mri_glmfit-sim? It will affect it some because the tessellations will be different. I have not done too many experiments to measure it, but the one I did do showed very little difference when using a subject-specific atlas. Your mileage may vary. mri_glmfit-sim expects there to be tables for each atlas. > > 2) I downloaded the simulations for multiple comparisons correction > mult-comp_cor.tar.gz. (which I later realized were also in > freesurfer/average/mult-comp-cor). How do I apply the simulations to > my data (assuming I used fsaverage)? It doesn't really say on the > group analysis page how to apply the *.cdf file (or I missed it). Run mri_glmfit-sim with the --cache option. Run it with --help to get more info. > > 3) I see on the list that mention is made of a possible symmetric > template, and there is an fsaverage-sym directory in the file I > downloaded. Is this template available? > Yes, see http://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi
doug > Thanks, > Darren > > -- > Darren Gitelman, MD > Northwestern University > 710 N. Lake Shore Dr. > Abbott 11th Floor > Chicago, IL 60611 > Ph: (312) 908-8614 > Fax: (312) 908-5073 > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
