Try this cd $SUBJECTS_DIR/subject/scripts mri_annotation2label --subject vol17 --hemi rh --lobesStrict lh.lobesfile mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.lobesfile.stats -b -a ../label/lh.lobesfile.annot subject lh white
doug On 10/05/2012 09:53 AM, Carolina Valencia wrote: > Hi FS users and developers, > > I need to obtain the volume per lobe (occipital, parietal, temporal, > frontal) in a particular subjects and if it is possible divided by > gray and white matter. > I found similar topics in the mailing list, but I don't succeed to get > this values. > I follow the instructions for the FSv5.1 Using mri_annotation2label > and mris_anatomical_stats but I got values for each hemisphere > instead of lobes. > mri_annotation2label --subject vol17 --hemi rh --lobesStrict rhlobesfile > mri_annotation2label --subject vol17 --hemi lh --lobesStrict lhlobesfile > then: > mris_anatomical_stats vol17 rh > mris_anatomical_stats vol17 lh > I got values > number of vertices = 115348 > total surface area = 76188 mm^2 > total gray matter volume = 282811 mm^3 > average cortical thickness = 3.071 mm +- 1.034 mm > average integrated rectified mean curvature = 0.149 > average integrated rectified Gaussian curvature = 0.106 > folding index = 4797 > intrinsic curvature index = 391.1 > > Can somebody guide me? > > Thank you in advance, > > -- > -- > *Carolina Valencia > * > > The information contained in this message and its attachments is > confidential and intended for exclusive use of the recipients. If you > received this email by error please notify the sender and delete it. > The use, retention or distribution for any purpose is prohibited. Link > is not responsible for damage caused by the contents of this message. > The recipient should check for any presence of viruses or other defects. > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
