Hi Bruce I converted the dicom into 001.mgz. Then I tried to reslice.
mri_convert -rl -i orig/001.mgz -o orig/001.mgz mri_convert -rl -i orig/001.mgz -o orig/001.mgz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from orig/001.mgz... TR=2730.00, TE=3.45, TI=1000.00, flip angle=7.00 i_ras = (-0, -1, 0) j_ras = (-0, -0, -1) k_ras = (-1, 0, 0) reading template info from volume -i... mri_read(): couldn't determine type of file /home/knutjb/freesurfer/expo/test/mri/-i error reading from volume -i Could you please give me an example on how to use mri_convert to reslice please? Knut J On 10/15/2012 12:43 AM, Bruce Fischl wrote: > Hi Knut > > you could mri_convert them into mri/orig/001.mgz and 002.mgz, > reslicing the 125 into the 128 geometry (-rl) and go from there. > > cheers > Bruce > > On Sun, 14 Oct 2012, Knut J Bjuland wrote: > >> Hi, >> >> When I import one subject with recon -i dicom -i dicom -s subjec, I get >> this error message ERROR: inputs have mismatched dimensions! I think it >> is caused by the fact that there is a different number of slices into >> the two series. One series has 256x256x125 white the other has >> 256x256x128. How can I detect if there is missing slices in the series >> with 125 slices? What would you recommend me to do? Is is possible to >> ask recon-all to bypass this error message and import both series? >> >> Knut J >> >> output >> >> k_ras = (-1, 0, 0) >> writing to >> /home/knutjb/freesurfer/subject_dir/subject/mri/orig/001.mgz... >> ERROR: inputs have mismatched dimensions! >> /home/knutjb/freesurfer/subject_dir/dicom/subject_dicom/t1_mpr_sag_3D/MR.9677.100 >> >> >> is >> 256 x 256 x 125 while >> /home/knutjb/freesurfer/subject_dir/dicom/subject_dicom/t1_mpr_sag_3D2/MR.9677.235 >> >> >> is >> 256 x 256 x 128 >> Linux dmed4960 3.2.0-32-generic #51-Ubuntu SMP Wed Sep 26 21:33:09 UTC >> 2012 x86_64 x86_64 x86_64 GNU/Linux >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > > The information in this e-mail is intended only for the person to whom > it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you > in error > but does not contain patient information, please contact the sender > and properly > dispose of the e-mail. > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
