save it as a patch
On Thu, 1 Nov 2012, octavian lie wrote:

Thank you, Bruce. Is seems that the cut works well in tksurfer, however I am 
unable to save the cut surface, if I use save or
save as, it saves the original (whole) surface. What should I do?
Octavian.

On Thu, Nov 1, 2012 at 11:49 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> 
wrote:
      the easiest thing would be to copy it into surface as lh.bem then run 
tksurfer on it
      On Thu, 1 Nov 2012, octavian lie wrote:

            Thank you for your quick prompt, how do I pull the inner skull 
surface into tksurfer, given it is in
            /bem and not in /surf, and
            does not have a lh or rh option?
            Octavian

            On Thu, Nov 1, 2012 at 11:41 AM, Bruce Fischl 
<fis...@nmr.mgh.harvard.edu> wrote:
                  Hi Octavian

                  sure, define a sagittal cutting plane in tksurfer, or in 
matlab set ripflag=1 for all vertices
            with the x coord > 0
                  (or < 0)

                  cheers
                  Bruce
                  On Thu, 1 Nov 2012, octavian lie wrote:

                        Dear all,
                         
                        Is there a way to crop a surface in FS, freeview or 
matlab? I have the inner_skull_surface
            in BEM
                        folder, and I want to see just
                        the right half, akin to cropping along the A (RAS) axis 
from the left. This is in order to
            visualize the
                        inside of the surface
                        with some electrode applications. Also, if the surface 
can be created in MNE just on the
            right side that
                        will solve it.
                        Help much appreciated,
                        Octavian Lie.




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