i tried replacing this file in tktools with the new tkregister2.bin, and i get a new error: /lib64/tls/libc.so.6: version GLIBC_2.4 not found
On Mon, Nov 5, 2012 at 6:06 PM, Douglas Greve <gr...@nmr.mgh.harvard.edu>wrote: > > OK, I see the problem. I should have told you to put tkregsiter2.bin into > /apps/fs510/tktools/ (after making a copy of the one there). > doug > > > > > On 11/5/12 5:00 PM, Eric Cunningham wrote: > > [e4fs@cluster bin]$ ls -l `which tkregister2.bin` > -rwxr-xr-- 1 jsadinol fs 21663433 May 22 2011 /apps/fs510/tktools/ > tkregister2.bin > > [e4fs@cluster bin]$ tkregister2 --all-info > ProgramName: tkregister2.in ProgramArguments: --all-info > ProgramVersion: $Name: stable5 $ TimeStamp: 2012/11/05-21:43:36-GMT > BuildtimeStamp: May 22 2011 08:23:31 CVS: $Id: tkregister2.c,v 1.121.2.1 > 2011/03/28 20:25:16 greve Exp $User: e4fs Machine: cluster.mrilab.net > Playform: Linux PlatformVersion: 2.6.9-55.0.2.ELsmp CompilerName: GCC > CompilerVersion: 30400 > > > > fyi: /apps/fs510/ = $FREESURFER_HOME > i tried replacing this file in tktools with the new tkregister2.bin, and i > get a new error: > /lib64/tls/libc.so.6: version GLIBC_2.4 not found > > > > On Mon, Nov 5, 2012 at 11:34 AM, Douglas N Greve < > gr...@nmr.mgh.harvard.edu> wrote: > >> Can you send me the result of >> >> ls -l `which tkregister2.bin` >> >> and >> >> tkregister2 --all-info >> >> >> doug >> >> >> >> >> On 11/05/2012 03:54 PM, Eric Cunningham wrote: >> >>> retried it, same error >>> >>> new file is .bin, old file is tkregister2, no old tkregister2.bin file >>> appeared to be in the folder $FREESURFER_HOME/bin >>> >>> On Mon, Nov 5, 2012 at 10:49 AM, Douglas N Greve < >>> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: >>> >>> I'm not sure that was the right thing to do. There should be two >>> files: >>> tkregister2 and tkregister2.bin. tkregister2 is just a script that >>> calls >>> tkregister2.bin after setting up some environment variables. Try >>> keeping >>> the original file name. >>> doug >>> >>> On 11/05/2012 03:43 PM, Eric Cunningham wrote: >>> > i am sure >>> > there is one irregularity, namely that the '.bin' extension is >>> absent >>> > from our old file, so i renamed the new file without it (as >>> > tkregister2) and moved the other one to tkregister2_backup >>> > >>> > the command i listed from previous threads was given to someone >>> else >>> > from our lab (and probably worked), so it is likely that the >>> problem >>> > is somewhere on our side, i was just hoping that it was known and >>> > recognizable from the error >>> > >>> > >>> > >>> > On Mon, Nov 5, 2012 at 10:15 AM, Douglas N Greve >>> > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>> <mailto:gr...@nmr.mgh.harvard.edu >>> <mailto:gr...@nmr.mgh.harvard.edu>>> wrote: >>> > >>> > are you sure you are using the new version? >>> > >>> > >>> > On 11/05/2012 02:38 PM, Eric Cunningham wrote: >>> > >>> > tried the new version, and it errored out at the same step >>> > >>> > ERROR: Option --lta-inv unknown >>> > >>> > thanks again for your help! >>> > >>> > On Mon, Nov 5, 2012 at 8:16 AM, Douglas N Greve >>> > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu >>> >> >>> > <mailto:gr...@nmr.mgh.harvard.edu <mailto: >>> gr...@nmr.mgh.harvard.edu> >>> > <mailto:gr...@nmr.mgh.harvard.edu >>> <mailto:gr...@nmr.mgh.harvard.edu>>>> wrote: >>> > >>> > Try using this version >>> > >>> >>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/tkregister2.bin >>> > copy it into $FREESURFER_HOME/bin (but make a back up >>> of >>> > the existing >>> > tkregister2.bin first!) >>> > doug >>> > >>> > On 11/02/2012 03:58 PM, Eric Cunningham wrote: >>> > > Hi folks, >>> > > In previous threads, the command provided to check the >>> > talairach.lta is... >>> > > tkregister2 --mov $FREESURFER_HOME/average/RB_all_2008-03-26.gca >>> > \ --targ ../brainmask.mgz --lta-inv talairach.lta >>> --reg >>> > talairach.lta.reg.dat \ --surfs --s $subject >>> > > >>> > > When I try to run this command, I run into trouble with the >>> > --lta-inv >>> > > portion. (it is an unknown option). I am running version 5.1. >>> > > Can anyone help? >>> > > Thanks, >>> > > -Eric >>> > > >>> > > >>> > > _______________________________________________ >>> > > Freesurfer mailing list >>> > > Freesurfer@nmr.mgh.harvard.edu >>> <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> > <mailto:Freesurfer@nmr.mgh.harvard.edu >>> <mailto:Freesurfer@nmr.mgh.harvard.edu>> >>> > <mailto:Freesurfer@nmr.mgh.harvard.edu >>> <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> > <mailto:Freesurfer@nmr.mgh.harvard.edu >>> <mailto:Freesurfer@nmr.mgh.harvard.edu>>> >>> > >>> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> > >>> > -- >>> > Douglas N. Greve, Ph.D. >>> > MGH-NMR Center >>> > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu >>> >> >>> > <mailto:gr...@nmr.mgh.harvard.edu <mailto: >>> gr...@nmr.mgh.harvard.edu> >>> > <mailto:gr...@nmr.mgh.harvard.edu >>> <mailto:gr...@nmr.mgh.harvard.edu>>> >>> > Phone Number: 617-724-2358 <tel:617-724-2358> >>> <tel:617-724-2358 <tel:617-724-2358>> >>> > <tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358 >>> <tel:617-724-2358>>> >>> > Fax: 617-726-7422 <tel:617-726-7422> >>> <tel:617-726-7422 <tel:617-726-7422>> <tel:617-726-7422 >>> <tel:617-726-7422> >>> > <tel:617-726-7422 <tel:617-726-7422>>> >>> > >>> > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >>> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >>> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >>> > FileDrop: >>> > www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >>> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >>> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >>> > >>> > _______________________________________________ >>> > Freesurfer mailing list >>> > Freesurfer@nmr.mgh.harvard.edu >>> <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> > <mailto:Freesurfer@nmr.mgh.harvard.edu >>> <mailto:Freesurfer@nmr.mgh.harvard.edu>> >>> > <mailto:Freesurfer@nmr.mgh.harvard.edu >>> <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> > <mailto:Freesurfer@nmr.mgh.harvard.edu >>> <mailto:Freesurfer@nmr.mgh.harvard.edu>>> >>> > >>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> > >>> > >>> > The information in this e-mail is intended only for the >>> > person to >>> > whom it is >>> > addressed. If you believe this e-mail was sent to you >>> in >>> > error and >>> > the e-mail >>> > contains patient information, please contact the >>> Partners >>> > Compliance HelpLine at >>> > http://www.partners.org/complianceline . If the e-mail was sent to >>> > you in error >>> > but does not contain patient information, please >>> contact the >>> > sender and properly >>> > dispose of the e-mail. >>> > >>> > >>> > >>> > -- >>> > Douglas N. Greve, Ph.D. >>> > MGH-NMR Center >>> > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu >>> >> >>> > Phone Number: 617-724-2358 <tel:617-724-2358> >>> <tel:617-724-2358 <tel:617-724-2358>> >>> > Fax: 617-726-7422 <tel:617-726-7422> <tel:617-726-7422 >>> <tel:617-726-7422>> >>> > >>> > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >>> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >>> > FileDrop: >>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >>> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >>> > >>> > >>> >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >>> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu <mailto: >>> Freesurfer@nmr.mgh.harvard.edu> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> >> > >
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