Hi Spanier
definitely don't invoke recon-all with the FLAIR image. We have some
tools in 5.2 for this, but you would call it as a postprocessing step with
a different command line in any case. Instead, you can use bbregister to
register the flair to the surfaces and resample it.
cheers
Bruce
On Sat, 1 Dec 2012, Assaf B. Spanier wrote:
Hi@all,
I have a dataset of several MRI T1 images and one Flair. All images of the
same subject and were taken in the same session. My goal is to register and
segment all those MRI images.
= A =
In my first try I have used, "recon-all -i image1 -i image2 etc'" for all
T1 images (here, I didn't use the Flair images ) . Follow this, I used the
"recon-all -all" command. (For about two days...)
Here come Question 1: After all this process, I didn't completely follow the
results I got... As I have noticed that I have only one segmentation file
(aparc.a2009s+aseg.mgz) ? How can I see the segmentation result
with tkmedit in the different brain images ?
= B =
As I would like the neuroanatomical labels to be inspected for accuracy by a
physician. My physician asks to see the segmentation result on top of the
Flair images (saying it easier for him to do so on Flair images)
So I've used the "recon-all -i image1 -i image2 etc'" command again
but this time I've also included the Flair image.
Here come Question 2: However, this time, unfortunately, the "recon-all -i
image1 -i image2 etc'" , failed, saying that:
~~~~~
images have different voxel sizes. Currently not supported, maybe first
make conform? Debug info: size(1) = 0.5078, 0.5078, 5.5 size(0) = 0.51,
0.51, 5.5
~~~~~
Is there something I can do to fix this ?
Thanks for everyone involved in this great project!
Highly appreciate your time and efforts.
Best,
Spanier
_______________________________________________
Freesurfer mailing list
[email protected]
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
