Hi Natasha, yes, you have to run recon-all separately for each scan. doug
On 12/06/2012 11:14 AM, Natasha Jawa wrote: > Hi, > > Is it possible to run recon-all on a series of scans? > > I have multiple scans that I want to process longitudinally. The .nii > files have all been converted to .mgz files and labelled sequentially > (i.e., 001.mgz, 002.mgz, etc.) in > /Applications/freesurfer/subjects/<subjid>/mri. I've tried running > recon-all on this whole folder with the command line: recon-all > -subjid <subjid> -all, but it does not execute properly. > > Do I have to run each of these scans separately using recon-all (i.e., > do I need to use a separate terminal for each scan)? > > Thank you in advance for your time and help. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
