Hello, thank you for your help with the first steps of running Tracula.
I was trying to run trac-all step 3 (paths), but was getting an error with the mergedph1samples file. I saw on the mailbase that you have suggested to run bedpost directly to fix this I have 3 questions about this: 1) do I need to delete any of the (temporary?) files or folders created by trac-all step 2 before running bedpost 2) should I run bedpost INSTEAD of trac-all step 2 for the remaining subjects? 3) you have suggested on the list to run bedpost as: bedpostx /usr/local/freesurfer/subjects/C001/dmri is this the same dmri folder as created by tracula step 1 (for each subject) Thank you so much for your help with this - I really appreciate it best wishes Prerona On 10 December 2012 19:54, Anastasia Yendiki <ayend...@nmr.mgh.harvard.edu> wrote: > > I'm guessing that this shows up in the scripts/trac-all.log of a particular > subject? Then it applies to that subject. > > > On Mon, 10 Dec 2012, s0675204 wrote: > >> Hello >> >> My trac- preproc has completed. However, I am confused about the >> status message. It says: >> >> #------------------------------------- >> trac-preproc finished without error at Mon Dec 10 16:32:20 EST 2012 >> ERROR: cannot find /home/canlilab/SBU/data/recon_output/00387 >> >> Does this mean it was completed succesfully for everyone or everyone >> but that 00387 person? >> >> Is there any way I can verify this? >> >> thank you so much for your help >> >> best wishes, >> >> Prerona >> >> >> On 8 December 2012 13:38, Anastasia Yendiki >> <ayend...@nmr.mgh.harvard.edu> wrote: >>> >>> >>> In your dmrirc, you define multiple subjects, but only one bvecfile and >>> one >>> bvalfile that are used for all subjects. >>> >>> >>> On Sat, 8 Dec 2012, s0675204 wrote: >>> >>>> the values are the same but each subject has an individual bvec & bval >>>> file. so it depends on how the script will read it? >>>> >>>> On 8 December 2012 00:03, Anastasia Yendiki >>>> <ayend...@nmr.mgh.harvard.edu> wrote: >>>>> >>>>> >>>>> >>>>> Are the bvecs/bvals not the same for all subjects? >>>>> >>>>> >>>>> On Fri, 7 Dec 2012, s0675204 wrote: >>>>> >>>>>> oh! i thought this was how these were meant to be! i will do that. >>>>>> sadly i left the lab and came home for the day but i will try it as >>>>>> soon as i am back and let you know! >>>>>> thank you so much! do we have to do this for each subject or just one >>>>>> time? >>>>>> >>>>>> >>>>>> >>>>>> On 7 December 2012 23:51, Anastasia Yendiki >>>>>> <ayend...@nmr.mgh.harvard.edu> wrote: >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> I see. Can you try formatting them in columns (1 column for the bvals >>>>>>> and >>>>>>> 3 >>>>>>> columns for the bvecs)? >>>>>>> >>>>>>> >>>>>>> On Fri, 7 Dec 2012, s0675204 wrote: >>>>>>> >>>>>>>> yes! these are the original files >>>>>>>> >>>>>>>> well these are the files i pointed to in my config file. and i think >>>>>>>> the script copies them over to the dmrirc folder? >>>>>>>> >>>>>>>> best wishes, >>>>>>>> >>>>>>>> Prerona >>>>>>>> >>>>>>>> >>>>>>>> On 7 December 2012 23:38, Anastasia Yendiki >>>>>>>> <ayend...@nmr.mgh.harvard.edu> wrote: >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> Yes, I can see that each of the bvecs/bvals files is one long line. >>>>>>>>> Was >>>>>>>>> that >>>>>>>>> the case for the original files that you specified in the dmrirc? >>>>>>>>> >>>>>>>>> >>>>>>>>> On Fri, 7 Dec 2012, s0675204 wrote: >>>>>>>>> >>>>>>>>>> Hi Anastasia >>>>>>>>>> >>>>>>>>>> I had attached the files, but maybe they did not go through to the >>>>>>>>>> mailing list? So I am sending them to your email id. Hope this is >>>>>>>>>> okay >>>>>>>>>> >>>>>>>>>> best wishes, >>>>>>>>>> >>>>>>>>>> Prerona >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> ---------- Forwarded message ---------- >>>>>>>>>> From: s0675204 <s0675...@sms.ed.ac.uk> >>>>>>>>>> Date: 7 December 2012 19:44 >>>>>>>>>> Subject: Re: [Freesurfer] Running Tracula: trac-preproc exited >>>>>>>>>> with >>>>>>>>>> ERRORS >>>>>>>>>> To: freesurfer@nmr.mgh.harvard.edu >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> Hello >>>>>>>>>> >>>>>>>>>> I think I spoke to soon! >>>>>>>>>> >>>>>>>>>> It ended with errors again. >>>>>>>>>> >>>>>>>>>> I get the error message: "bvecs and bvals don't have the same >>>>>>>>>> number >>>>>>>>>> of >>>>>>>>>> entries" >>>>>>>>>> >>>>>>>>>> I saw on some older messages on the mail-base you said that we >>>>>>>>>> need >>>>>>>>>> to >>>>>>>>>> check that the number of entries in the bvals is same as and bvecs >>>>>>>>>> is >>>>>>>>>> 3 times as much as the number of volumes. I have checked that this >>>>>>>>>> is >>>>>>>>>> the case >>>>>>>>>> >>>>>>>>>> I am wondering if it is some formatting problem? there are no >>>>>>>>>> spaces >>>>>>>>>> at the end of the file. and there are no end of line markers >>>>>>>>>> either. >>>>>>>>>> >>>>>>>>>> Please could you advise me? I have attached the files and also >>>>>>>>>> pasted >>>>>>>>>> the contents below >>>>>>>>>> >>>>>>>>>> My config file is still the same (as pasted below) except I tried >>>>>>>>>> changing >>>>>>>>>> nb0 to 2 >>>>>>>>>> >>>>>>>>>> (# Number of low-b images >>>>>>>>>> # Must be specified if inputs are not DICOM >>>>>>>>>> # Default: Read from DICOM header >>>>>>>>>> # >>>>>>>>>> set nb0 = 2) >>>>>>>>>> >>>>>>>>>> best wishes, >>>>>>>>>> >>>>>>>>>> Prerona >>>>>>>>>> >>>>>>>>>> ========================================================= >>>>>>>>>> bvals: >>>>>>>>>> >>>>>>>>>> 0 800 800 800 800 800 800 800 800 800 800 800 800 800 800 800 800 >>>>>>>>>> 800 >>>>>>>>>> 800 800 800 0 800 800 800 800 800 800 800 800 800 800 800 800 800 >>>>>>>>>> 800 >>>>>>>>>> 800 800 800 800 800 800 >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> bvecs: >>>>>>>>>> >>>>>>>>>> 0 0.99864840507507 0.01463935524225 0.01274211052805 >>>>>>>>>> 0.85177010297775 >>>>>>>>>> 0.86449736356735 0.85295587778091 0.83894062042236 0.7912425994873 >>>>>>>>>> 0.51641523838043 0.46147873997688 0.54209464788436 >>>>>>>>>> 0.44143822789192 >>>>>>>>>> 0.52723878622055 0.4250853061676 0.51590526103973 0.43744987249374 >>>>>>>>>> 0.50455766916275 0.05208261311054 0.06073396280407 >>>>>>>>>> 0.00979638285934 >>>>>>>>>> 0 >>>>>>>>>> 0.99864840507507 0.01463935524225 0.01274211052805 >>>>>>>>>> 0.85177010297775 >>>>>>>>>> 0.86449736356735 0.85295587778091 0.83894062042236 0.7912425994873 >>>>>>>>>> 0.51641523838043 0.46147873997688 0.54209464788436 >>>>>>>>>> 0.44143822789192 >>>>>>>>>> 0.52723878622055 0.4250853061676 0.51590526103973 0.43744987249374 >>>>>>>>>> 0.50455766916275 0.05208261311054 0.06073396280407 >>>>>>>>>> 0.00979638285934 >>>>>>>>>> 0 >>>>>>>>>> -0.00687454920262 0.96709138154983 0.62002921104431 >>>>>>>>>> 0.52092331647872 >>>>>>>>>> 0.18501849472522 -0.42448142170906 -0.44344407320022 >>>>>>>>>> 0.15539556741714 >>>>>>>>>> 0.60610836744308 0.88347893953323 0.71210372447967 >>>>>>>>>> 0.30400663614273 >>>>>>>>>> -0.23736105859279 -0.70398008823394 -0.85636389255523 >>>>>>>>>> -0.73376137018203 -0.22848516702652 -0.00803200621157 >>>>>>>>>> 0.51328992843627 >>>>>>>>>> 0.93218487501144 0 -0.00687454920262 0.96709138154983 >>>>>>>>>> 0.62002921104431 >>>>>>>>>> 0.52092331647872 0.18501849472522 -0.42448142170906 >>>>>>>>>> -0.44344407320022 >>>>>>>>>> 0.15539556741714 0.60610836744308 0.88347893953323 >>>>>>>>>> 0.71210372447967 >>>>>>>>>> 0.30400663614273 -0.23736105859279 -0.70398008823394 >>>>>>>>>> -0.85636389255523 >>>>>>>>>> -0.73376137018203 -0.22848516702652 -0.00803200621157 >>>>>>>>>> 0.51328992843627 >>>>>>>>>> 0.93218487501144 0 0.05151799321174 -0.2540076971054 >>>>>>>>>> -0.78447526693344 >>>>>>>>>> 0.05591572076082 -0.46734625101089 -0.3037790954113 >>>>>>>>>> 0.31549325585365 >>>>>>>>>> 0.5914282798767 0.60493636131286 0.08063688874244 >>>>>>>>>> -0.44614082574844 >>>>>>>>>> -0.84422290325164 -0.81589156389236 -0.56895911693573 >>>>>>>>>> -0.02196817658841 0.51983833312988 0.83259600400924 >>>>>>>>>> 0.99861049652099 >>>>>>>>>> 0.85606354475021 0.36184993386268 0 0.05151799321174 >>>>>>>>>> -0.2540076971054 >>>>>>>>>> -0.78447526693344 0.05591572076082 -0.46734625101089 >>>>>>>>>> -0.3037790954113 >>>>>>>>>> 0.31549325585365 0.5914282798767 0.60493636131286 0.08063688874244 >>>>>>>>>> -0.44614082574844 -0.84422290325164 -0.81589156389236 >>>>>>>>>> -0.56895911693573 -0.02196817658841 0.51983833312988 >>>>>>>>>> 0.83259600400924 >>>>>>>>>> 0.99861049652099 0.85606354475021 0.36184993386268 >>>>>>>>>> On 7 December 2012 14:08, Anastasia Yendiki >>>>>>>>>> <ayend...@nmr.mgh.harvard.edu> wrote: >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> Great, I love easy problems :) >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> On Fri, 7 Dec 2012, s0675204 wrote: >>>>>>>>>>> >>>>>>>>>>>> Thank you! It's chugging away now >>>>>>>>>>>> >>>>>>>>>>>> best wishes, >>>>>>>>>>>> >>>>>>>>>>>> Prerona >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> On 7 December 2012 13:46, Anastasia Yendiki >>>>>>>>>>>> <ayend...@nmr.mgh.harvard.edu> wrote: >>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> Hi Prerona - You need to uncomment the bvecfile and bvalfile >>>>>>>>>>>>> definitions >>>>>>>>>>>>> in >>>>>>>>>>>>> your configuration file. >>>>>>>>>>>>> >>>>>>>>>>>>> Hope this helps, >>>>>>>>>>>>> a.y >>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> On Fri, 7 Dec 2012, s0675204 wrote: >>>>>>>>>>>>> >>>>>>>>>>>>>> Hello >>>>>>>>>>>>>> >>>>>>>>>>>>>> I am trying to run Tracula on a set of dicoms files. I have >>>>>>>>>>>>>> run >>>>>>>>>>>>>> recon-all previously. >>>>>>>>>>>>>> I am getting a message trac-preproc exited with ERRORS >>>>>>>>>>>>>> >>>>>>>>>>>>>> Please can anyone advise me on this? >>>>>>>>>>>>>> I have listed all the details (command, error/output, config >>>>>>>>>>>>>> file) >>>>>>>>>>>>>> below >>>>>>>>>>>>>> >>>>>>>>>>>>>> Thank you so much for your help >>>>>>>>>>>>>> >>>>>>>>>>>>>> best wishes, >>>>>>>>>>>>>> >>>>>>>>>>>>>> Prerona >>>>>>>>>>>>>> >>>>>>>>>>>>>> DETAILS >>>>>>>>>>>>>> ========================================= >>>>>>>>>>>>>> command used: trac-all -prep -c >>>>>>>>>>>>>> ./scripts/dmrirc_single_subject >>>>>>>>>>>>>> >>>>>>>>>>>>>> ========================================= >>>>>>>>>>>>>> error message >>>>>>>>>>>>>> >>>>>>>>>>>>>> ========================================= >>>>>>>>>>>>>> canlilab@112-205:~/SBU/data/tracula$ trac-all -prep -c >>>>>>>>>>>>>> ./scripts/dmrirc_single_subject >>>>>>>>>>>>>> INFO: SUBJECTS_DIR is /home/canlilab/SBU/data/recon_output >>>>>>>>>>>>>> INFO: Diffusion root is /home/canlilab/SBU/data/tracula >>>>>>>>>>>>>> Actual FREESURFER_HOME /home/canlilab/freesurfer >>>>>>>>>>>>>> trac-preproc -c >>>>>>>>>>>>>> /home/canlilab/SBU/data/tracula/00075/scripts/dmrirc.local >>>>>>>>>>>>>> -log >>>>>>>>>>>>>> /home/canlilab/SBU/data/tracula/00075/scripts/trac-all.log >>>>>>>>>>>>>> -cmd >>>>>>>>>>>>>> /home/canlilab/SBU/data/tracula/00075/scripts/trac-all.cmd >>>>>>>>>>>>>> #------------------------------------- >>>>>>>>>>>>>> /home/canlilab/freesurfer/bin/trac-preproc >>>>>>>>>>>>>> #------------------------------------- >>>>>>>>>>>>>> #@# Image corrections Fri Dec 7 10:42:30 EST 2012 >>>>>>>>>>>>>> mri_convert >>>>>>>>>>>>>> /home/canlilab/SBU/data/dti_dicoms/00075/data_1.dcm >>>>>>>>>>>>>> /home/canlilab/SBU/data/tracula/00075/dmri/dwi_orig.nii.gz >>>>>>>>>>>>>> mri_convert >>>>>>>>>>>>>> /home/canlilab/SBU/data/dti_dicoms/00075/data_1.dcm >>>>>>>>>>>>>> /home/canlilab/SBU/data/tracula/00075/dmri/dwi_orig.nii.gz >>>>>>>>>>>>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ >>>>>>>>>>>>>> reading from >>>>>>>>>>>>>> /home/canlilab/SBU/data/dti_dicoms/00075/data_1.dcm... >>>>>>>>>>>>>> Getting Series No >>>>>>>>>>>>>> INFO: Found 44 files in >>>>>>>>>>>>>> /home/canlilab/SBU/data/dti_dicoms/00075 >>>>>>>>>>>>>> INFO: Scanning for Series Number 7 >>>>>>>>>>>>>> Scanning Directory >>>>>>>>>>>>>> INFO: found 42 files in series >>>>>>>>>>>>>> INFO: loading series header info. >>>>>>>>>>>>>> >>>>>>>>>>>>>> RunNo = 6 >>>>>>>>>>>>>> WARNING: Run 1 appears to be truncated >>>>>>>>>>>>>> Files Found: 42, Files Expected (lRep+1): 2 >>>>>>>>>>>>>> FileName >>>>>>>>>>>>>> /home/canlilab/SBU/data/dti_dicoms/00075/data_1.dcm >>>>>>>>>>>>>> Identification >>>>>>>>>>>>>> NumarisVer syngo MR B17 >>>>>>>>>>>>>> ScannerModel TrioTim >>>>>>>>>>>>>> PatientName S790_P72_TC >>>>>>>>>>>>>> Date and time >>>>>>>>>>>>>> StudyDate 20120502 >>>>>>>>>>>>>> StudyTime 120741.390000 >>>>>>>>>>>>>> SeriesTime 125649.953000 >>>>>>>>>>>>>> AcqTime 125626.150000 >>>>>>>>>>>>>> Acquisition parameters >>>>>>>>>>>>>> PulseSeq ep_b0 >>>>>>>>>>>>>> Protocol DTI >>>>>>>>>>>>>> PhEncDir COL >>>>>>>>>>>>>> EchoNo 1 >>>>>>>>>>>>>> FlipAngle 90 >>>>>>>>>>>>>> EchoTime 93 >>>>>>>>>>>>>> InversionTime -1 >>>>>>>>>>>>>> RepetitionTime 5500 >>>>>>>>>>>>>> PhEncFOV 220 >>>>>>>>>>>>>> ReadoutFOV 220 >>>>>>>>>>>>>> Image information >>>>>>>>>>>>>> RunNo 6 >>>>>>>>>>>>>> SeriesNo 7 >>>>>>>>>>>>>> ImageNo 1 >>>>>>>>>>>>>> NImageRows 896 >>>>>>>>>>>>>> NImageCols 896 >>>>>>>>>>>>>> NFrames 42 >>>>>>>>>>>>>> SliceArraylSize 40 >>>>>>>>>>>>>> IsMosaic 1 >>>>>>>>>>>>>> ImgPos 772.3238 773.0634 185.5347 >>>>>>>>>>>>>> VolRes 1.7188 1.7188 3.0000 >>>>>>>>>>>>>> VolDim 128 128 40 >>>>>>>>>>>>>> Vc -0.9983 0.0151 -0.0555 >>>>>>>>>>>>>> Vr -0.0000 -0.9648 -0.2629 >>>>>>>>>>>>>> Vs -0.0575 -0.2625 0.9632 >>>>>>>>>>>>>> VolCenter 0.0000 0.0000 0.0000 >>>>>>>>>>>>>> TransferSyntaxUID 1.2.840.10008.1.2.1 >>>>>>>>>>>>>> INFO: sorting. >>>>>>>>>>>>>> INFO: (128 128 40), nframes = 42, ismosaic=1 >>>>>>>>>>>>>> Could not parse NUMARIS version string syngo MR B17 >>>>>>>>>>>>>> found in dicom tag 18,1020 (len = 3 != 6) >>>>>>>>>>>>>> Repetition Time = 5500, TR = 5500 ms >>>>>>>>>>>>>> PE Dir COL COL >>>>>>>>>>>>>> AutoAlign matrix detected >>>>>>>>>>>>>> AutoAlign Matrix --------------------- >>>>>>>>>>>>>> 1.000 0.000 0.000 0.000; >>>>>>>>>>>>>> 0.000 1.000 0.000 0.000; >>>>>>>>>>>>>> 0.000 0.000 1.000 0.000; >>>>>>>>>>>>>> 0.000 0.000 0.000 1.000; >>>>>>>>>>>>>> >>>>>>>>>>>>>> FileName >>>>>>>>>>>>>> /home/canlilab/SBU/data/dti_dicoms/00075/data_1.dcm >>>>>>>>>>>>>> Identification >>>>>>>>>>>>>> NumarisVer syngo MR B17 >>>>>>>>>>>>>> ScannerModel TrioTim >>>>>>>>>>>>>> PatientName S790_P72_TC >>>>>>>>>>>>>> Date and time >>>>>>>>>>>>>> StudyDate 20120502 >>>>>>>>>>>>>> StudyTime 120741.390000 >>>>>>>>>>>>>> SeriesTime 125649.953000 >>>>>>>>>>>>>> AcqTime 125626.150000 >>>>>>>>>>>>>> Acquisition parameters >>>>>>>>>>>>>> PulseSeq ep_b0 >>>>>>>>>>>>>> Protocol DTI >>>>>>>>>>>>>> PhEncDir COL >>>>>>>>>>>>>> EchoNo 1 >>>>>>>>>>>>>> FlipAngle 90 >>>>>>>>>>>>>> EchoTime 93 >>>>>>>>>>>>>> InversionTime -1 >>>>>>>>>>>>>> RepetitionTime 5500 >>>>>>>>>>>>>> PhEncFOV 220 >>>>>>>>>>>>>> ReadoutFOV 220 >>>>>>>>>>>>>> Image information >>>>>>>>>>>>>> RunNo 6 >>>>>>>>>>>>>> SeriesNo 7 >>>>>>>>>>>>>> ImageNo 1 >>>>>>>>>>>>>> NImageRows 896 >>>>>>>>>>>>>> NImageCols 896 >>>>>>>>>>>>>> NFrames 42 >>>>>>>>>>>>>> SliceArraylSize 40 >>>>>>>>>>>>>> IsMosaic 1 >>>>>>>>>>>>>> ImgPos 113.4156 146.2544 -24.5854 >>>>>>>>>>>>>> VolRes 1.7188 1.7188 3.0000 >>>>>>>>>>>>>> VolDim 128 128 40 >>>>>>>>>>>>>> Vc -0.9983 0.0151 -0.0555 >>>>>>>>>>>>>> Vr -0.0000 -0.9648 -0.2629 >>>>>>>>>>>>>> Vs -0.0575 -0.2625 0.9632 >>>>>>>>>>>>>> VolCenter 0.1478 26.0388 -1.8116 >>>>>>>>>>>>>> TransferSyntaxUID 1.2.840.10008.1.2.1 >>>>>>>>>>>>>> sagrev = 0, correv =0, trarev = 0 >>>>>>>>>>>>>> Vs = -0.0574949 -0.262456 0.963229 >>>>>>>>>>>>>> INFO: no Siemens slice order reversal detected (good!). >>>>>>>>>>>>>> TR=5500.00, TE=93.00, TI=-1.00, flip angle=90.00 >>>>>>>>>>>>>> i_ras = (-0.998346, 0.0151149, -0.0554726) >>>>>>>>>>>>>> j_ras = (-3.31902e-08, -0.964826, -0.262891) >>>>>>>>>>>>>> k_ras = (-0.0574949, -0.262456, 0.963229) >>>>>>>>>>>>>> writing to >>>>>>>>>>>>>> /home/canlilab/SBU/data/tracula/00075/dmri/dwi_orig.nii.gz... >>>>>>>>>>>>>> mri_probedicom --i >>>>>>>>>>>>>> /home/canlilab/SBU/data/dti_dicoms/00075/data_1.dcm >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> /home/canlilab/SBU/data/tracula/00075/dmri/dcminfo.dat >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> flip4fsl >>>>>>>>>>>>>> /home/canlilab/SBU/data/tracula/00075/dmri/dwi_orig.nii.gz >>>>>>>>>>>>>> >>>>>>>>>>>>>> /home/canlilab/SBU/data/tracula/00075/dmri/dwi_orig_flip.nii.gz >>>>>>>>>>>>>> INFO: input image orientation is LPS >>>>>>>>>>>>>> INFO: input image determinant is 8.86231 >>>>>>>>>>>>>> fslswapdim >>>>>>>>>>>>>> /home/canlilab/SBU/data/tracula/00075/dmri/dwi_orig.nii.gz >>>>>>>>>>>>>> x -y z >>>>>>>>>>>>>> >>>>>>>>>>>>>> /home/canlilab/SBU/data/tracula/00075/dmri/dwi_orig_flip.nii.gz >>>>>>>>>>>>>> INFO: left-right orientation was flipped by fslswapdim >>>>>>>>>>>>>> fslorient -forceradiological >>>>>>>>>>>>>> >>>>>>>>>>>>>> /home/canlilab/SBU/data/tracula/00075/dmri/dwi_orig_flip.nii.gz >>>>>>>>>>>>>> mv -f >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> /home/canlilab/SBU/data/tracula/00075/dmri/dwi_orig_flip.mghdti.bvecs >>>>>>>>>>>>>> /home/canlilab/SBU/data/tracula/00075/dmri/bvecs >>>>>>>>>>>>>> mv: cannot stat >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> `/home/canlilab/SBU/data/tracula/00075/dmri/dwi_orig_flip.mghdti.bvecs': >>>>>>>>>>>>>> No such file or directory >>>>>>>>>>>>>> Linux 112-205.psy.sunysb.edu 2.6.32-279.5.2.el6.x86_64 #1 SMP >>>>>>>>>>>>>> Fri >>>>>>>>>>>>>> Aug >>>>>>>>>>>>>> 24 01:07:11 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux >>>>>>>>>>>>>> >>>>>>>>>>>>>> trac-preproc exited with ERRORS at Fri Dec 7 10:42:51 EST >>>>>>>>>>>>>> 2012 >>>>>>>>>>>>>> ============================================== >>>>>>>>>>>>>> >>>>>>>>>>>>>> config file: >>>>>>>>>>>>>> ============================================== >>>>>>>>>>>>>> # >>>>>>>>>>>>>> # dmrirc.example >>>>>>>>>>>>>> # >>>>>>>>>>>>>> # This file contains commands that will be run by trac-all >>>>>>>>>>>>>> before >>>>>>>>>>>>>> an >>>>>>>>>>>>>> analysis. >>>>>>>>>>>>>> # It is used to set all parameters needed for the analysis. >>>>>>>>>>>>>> # >>>>>>>>>>>>>> # Remove a parameter from your dmrirc file if you want use the >>>>>>>>>>>>>> default >>>>>>>>>>>>>> value. >>>>>>>>>>>>>> # Parameters that don't have default values must be specified. >>>>>>>>>>>>>> # >>>>>>>>>>>>>> # Any other commands that you might want to run before an >>>>>>>>>>>>>> analysis >>>>>>>>>>>>>> can >>>>>>>>>>>>>> be >>>>>>>>>>>>>> added >>>>>>>>>>>>>> # to this file. >>>>>>>>>>>>>> # >>>>>>>>>>>>>> # Original Author: Anastasia Yendiki >>>>>>>>>>>>>> # CVS Revision Info: >>>>>>>>>>>>>> # $Author: ayendiki $ >>>>>>>>>>>>>> # $Date: 2011/05/24 06:47:12 $ >>>>>>>>>>>>>> # $Revision: 1.3.2.3 $ >>>>>>>>>>>>>> # >>>>>>>>>>>>>> # Copyright © 2011 The General Hospital Corporation (Boston >>>>>>>>>>>>>> MA) >>>>>>>>>>>>>> "MGH" >>>>>>>>>>>>>> # >>>>>>>>>>>>>> # Terms and conditions for use reproduction distribution and >>>>>>>>>>>>>> contribution >>>>>>>>>>>>>> # are found in the 'FreeSurfer Software License Agreement' >>>>>>>>>>>>>> contained >>>>>>>>>>>>>> # in the file 'LICENSE' found in the FreeSurfer distribution >>>>>>>>>>>>>> and >>>>>>>>>>>>>> here: >>>>>>>>>>>>>> # >>>>>>>>>>>>>> # >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferSoftwareLicense >>>>>>>>>>>>>> # >>>>>>>>>>>>>> # Reporting: freesurfer@nmr.mgh.harvard.edu >>>>>>>>>>>>>> # >>>>>>>>>>>>>> # >>>>>>>>>>>>>> >>>>>>>>>>>>>> # FreeSurfer SUBJECTS_DIR >>>>>>>>>>>>>> # T1 images and FreeSurfer segmentations are expected to be >>>>>>>>>>>>>> found >>>>>>>>>>>>>> here >>>>>>>>>>>>>> # setenv SUBJECTS_DIR /path/to/recons/of/ducks >>>>>>>>>>>>>> >>>>>>>>>>>>>> # Output directory where trac-all results will be saved >>>>>>>>>>>>>> # Default: Same as SUBJECTS_DIR >>>>>>>>>>>>>> # >>>>>>>>>>>>>> set dtroot = $pre_data/tracula >>>>>>>>>>>>>> >>>>>>>>>>>>>> # Subject IDs >>>>>>>>>>>>>> # >>>>>>>>>>>>>> set subjlist = (00075 00104 00122 00200 00308 00369 00387 >>>>>>>>>>>>>> 00400 >>>>>>>>>>>>>> 00422 >>>>>>>>>>>>>> 00452 00518 00568 00587 00624 00636 00686 00698 00727 00909 >>>>>>>>>>>>>> 00926 >>>>>>>>>>>>>> 00933 00943 00983 00992 01049 01121 01329 01450 01509 01531 >>>>>>>>>>>>>> 01678 >>>>>>>>>>>>>> 01735 01746 01809 01843 01917 10039 10056 10089 10165 10171 >>>>>>>>>>>>>> 10227 >>>>>>>>>>>>>> 10238 10263 10314 10320 10326 10349 10407 10431 10435 10458 >>>>>>>>>>>>>> 10477 >>>>>>>>>>>>>> 10499 10500 10636 10750 11209 12210 12357 12472 12645 13493 >>>>>>>>>>>>>> 13958 >>>>>>>>>>>>>> 14302 14481 14530 15329 15345 15864 16654 17267 17478 18337 >>>>>>>>>>>>>> 18422 >>>>>>>>>>>>>> 18530 19259 19377 19725 20071 20383 21413 23846 24115 24531 >>>>>>>>>>>>>> 24781 >>>>>>>>>>>>>> 25962 26314 26475 28822 30510 30571 30927 31034 31049 31237 >>>>>>>>>>>>>> 31437 >>>>>>>>>>>>>> 31471 31531 32131 32162 32222) >>>>>>>>>>>>>> >>>>>>>>>>>>>> # In case you want to analyze only Huey and Louie >>>>>>>>>>>>>> # Default: Run analysis on all subjects >>>>>>>>>>>>>> # >>>>>>>>>>>>>> set runlist = (1 2 3 4 5 6 >>>>>>>>>>>>>> 7 >>>>>>>>>>>>>> 8 9 10 11 12 13 14 15 >>>>>>>>>>>>>> 16 >>>>>>>>>>>>>> 17 18 19 20 21 22 23 24 >>>>>>>>>>>>>> 25 >>>>>>>>>>>>>> 26 27 28 29 30 31 32 33 >>>>>>>>>>>>>> 34 >>>>>>>>>>>>>> 35 36 37 38 39 40 41 42 >>>>>>>>>>>>>> 43 >>>>>>>>>>>>>> 44 45 46 47 48 49 50 51 >>>>>>>>>>>>>> 52 >>>>>>>>>>>>>> 53 54 55 56 57 58 59 60 >>>>>>>>>>>>>> 61 62 63 64 65 66 67 68 >>>>>>>>>>>>>> 69 >>>>>>>>>>>>>> 70 71 72 73 74 75 76 77 >>>>>>>>>>>>>> 78 >>>>>>>>>>>>>> 79 80 81 82 83 84 85 86 >>>>>>>>>>>>>> 87 >>>>>>>>>>>>>> 88 89 90 91 92 93 94 95 >>>>>>>>>>>>>> 96 >>>>>>>>>>>>>> 97 98 99 100 101 102) >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> # Input diffusion DICOMs (file names relative to dcmroot) >>>>>>>>>>>>>> # If original DICOMs don't exist these can be in other image >>>>>>>>>>>>>> format >>>>>>>>>>>>>> # but then bvecfile bvalfile and nb0 must be specified (see >>>>>>>>>>>>>> below) >>>>>>>>>>>>>> # >>>>>>>>>>>>>> >>>>>>>>>>>>>> set dcmroot = $pre_data/dti_dicoms >>>>>>>>>>>>>> set dcmlist = (00075/data_1.dcm \ >>>>>>>>>>>>>> 00104/data_1.dcm \ >>>>>>>>>>>>>> 00122/data_1.dcm \ >>>>>>>>>>>>>> 00200/data_1.dcm \ >>>>>>>>>>>>>> 00308/data_1.dcm \ >>>>>>>>>>>>>> 00369/data_1.dcm \ >>>>>>>>>>>>>> 00387/data_1.dcm \ >>>>>>>>>>>>>> 00400/data_1.dcm \ >>>>>>>>>>>>>> 00422/data_1.dcm \ >>>>>>>>>>>>>> 00452/data_1.dcm \ >>>>>>>>>>>>>> 00518/data_1.dcm \ >>>>>>>>>>>>>> 00568/data_1.dcm \ >>>>>>>>>>>>>> 00587/data_1.dcm \ >>>>>>>>>>>>>> 00624/data_1.dcm \ >>>>>>>>>>>>>> 00636/data_1.dcm \ >>>>>>>>>>>>>> 00686/data_1.dcm \ >>>>>>>>>>>>>> 00698/data_1.dcm \ >>>>>>>>>>>>>> 00727/data_1.dcm \ >>>>>>>>>>>>>> 00909/data_1.dcm \ >>>>>>>>>>>>>> 00926/data_1.dcm \ >>>>>>>>>>>>>> 00933/data_1.dcm \ >>>>>>>>>>>>>> 00943/data_1.dcm \ >>>>>>>>>>>>>> 00983/data_1.dcm \ >>>>>>>>>>>>>> 00992/data_1.dcm \ >>>>>>>>>>>>>> 01049/data_1.dcm \ >>>>>>>>>>>>>> 01121/data_1.dcm \ >>>>>>>>>>>>>> 01329/data_1.dcm \ >>>>>>>>>>>>>> 01450/data_1.dcm \ >>>>>>>>>>>>>> 01509/data_1.dcm \ >>>>>>>>>>>>>> 01531/data_1.dcm \ >>>>>>>>>>>>>> 01678/data_1.dcm \ >>>>>>>>>>>>>> 01735/data_1.dcm \ >>>>>>>>>>>>>> 01746/data_1.dcm \ >>>>>>>>>>>>>> 01809/data_1.dcm \ >>>>>>>>>>>>>> 01843/data_1.dcm \ >>>>>>>>>>>>>> 01917/data_1.dcm \ >>>>>>>>>>>>>> 10039/data_1.dcm \ >>>>>>>>>>>>>> 10056/data_1.dcm \ >>>>>>>>>>>>>> 10089/data_1.dcm \ >>>>>>>>>>>>>> 10165/data_1.dcm \ >>>>>>>>>>>>>> 10171/data_1.dcm \ >>>>>>>>>>>>>> 10227/data_1.dcm \ >>>>>>>>>>>>>> 10238/data_1.dcm \ >>>>>>>>>>>>>> 10263/data_1.dcm \ >>>>>>>>>>>>>> 10314/data_1.dcm \ >>>>>>>>>>>>>> 10320/data_1.dcm \ >>>>>>>>>>>>>> 10326/data_1.dcm \ >>>>>>>>>>>>>> 10349/data_1.dcm \ >>>>>>>>>>>>>> 10407/data_1.dcm \ >>>>>>>>>>>>>> 10431/data_1.dcm \ >>>>>>>>>>>>>> 10435/data_1.dcm \ >>>>>>>>>>>>>> 10458/data_1.dcm \ >>>>>>>>>>>>>> 10477/data_1.dcm \ >>>>>>>>>>>>>> 10499/data_1.dcm \ >>>>>>>>>>>>>> 10500/data_1.dcm \ >>>>>>>>>>>>>> 10636/data_1.dcm \ >>>>>>>>>>>>>> 10750/data_1.dcm \ >>>>>>>>>>>>>> 11209/data_1.dcm \ >>>>>>>>>>>>>> 12210/data_1.dcm \ >>>>>>>>>>>>>> 12357/data_1.dcm \ >>>>>>>>>>>>>> 12472/data_1.dcm \ >>>>>>>>>>>>>> 12645/data_1.dcm \ >>>>>>>>>>>>>> 13493/data_1.dcm \ >>>>>>>>>>>>>> 13958/data_1.dcm \ >>>>>>>>>>>>>> 14302/data_1.dcm \ >>>>>>>>>>>>>> 14481/data_1.dcm \ >>>>>>>>>>>>>> 14530/data_1.dcm \ >>>>>>>>>>>>>> 15329/data_1.dcm \ >>>>>>>>>>>>>> 15345/data_1.dcm \ >>>>>>>>>>>>>> 15864/data_1.dcm \ >>>>>>>>>>>>>> 16654/data_1.dcm \ >>>>>>>>>>>>>> 17267/data_1.dcm \ >>>>>>>>>>>>>> 17478/data_1.dcm \ >>>>>>>>>>>>>> 18337/data_1.dcm \ >>>>>>>>>>>>>> 18422/data_1.dcm \ >>>>>>>>>>>>>> 18530/data_1.dcm \ >>>>>>>>>>>>>> 19259/data_1.dcm \ >>>>>>>>>>>>>> 19377/data_1.dcm \ >>>>>>>>>>>>>> 19725/data_1.dcm \ >>>>>>>>>>>>>> 20071/data_1.dcm \ >>>>>>>>>>>>>> 20383/data_1.dcm \ >>>>>>>>>>>>>> 21413/data_1.dcm \ >>>>>>>>>>>>>> 23846/data_1.dcm \ >>>>>>>>>>>>>> 24115/data_1.dcm \ >>>>>>>>>>>>>> 24531/data_1.dcm \ >>>>>>>>>>>>>> 24781/data_1.dcm \ >>>>>>>>>>>>>> 25962/data_1.dcm \ >>>>>>>>>>>>>> 26314/data_1.dcm \ >>>>>>>>>>>>>> 26475/data_1.dcm \ >>>>>>>>>>>>>> 28822/data_1.dcm \ >>>>>>>>>>>>>> 30510/data_1.dcm \ >>>>>>>>>>>>>> 30571/data_1.dcm \ >>>>>>>>>>>>>> 30927/data_1.dcm \ >>>>>>>>>>>>>> 31034/data_1.dcm \ >>>>>>>>>>>>>> 31049/data_1.dcm \ >>>>>>>>>>>>>> 31237/data_1.dcm \ >>>>>>>>>>>>>> 31437/data_1.dcm \ >>>>>>>>>>>>>> 31471/data_1.dcm \ >>>>>>>>>>>>>> 31531/data_1.dcm \ >>>>>>>>>>>>>> 32131/data_1.dcm \ >>>>>>>>>>>>>> 32162/data_1.dcm \ >>>>>>>>>>>>>> 32222/data_1.dcm) >>>>>>>>>>>>>> >>>>>>>>>>>>>> # Diffusion gradient table >>>>>>>>>>>>>> # Must be specified if inputs are not MGH DICOMs >>>>>>>>>>>>>> # Three-column format one row for each volume in the diffusion >>>>>>>>>>>>>> data >>>>>>>>>>>>>> set >>>>>>>>>>>>>> # Default: Read from DICOM header >>>>>>>>>>>>>> # >>>>>>>>>>>>>> #set bvecfile = $pre_data/DTI_Analysis/00075/bvecs.txt >>>>>>>>>>>>>> >>>>>>>>>>>>>> # Diffusion b-value table >>>>>>>>>>>>>> # Must be specified if inputs are not MGH DICOMs >>>>>>>>>>>>>> # Single-column format one value for each volume in the >>>>>>>>>>>>>> diffusion >>>>>>>>>>>>>> data >>>>>>>>>>>>>> set >>>>>>>>>>>>>> # Default: Read from DICOM header >>>>>>>>>>>>>> # >>>>>>>>>>>>>> #set bvalfile = $pre_data/DTI_Analysis/00075/bvals.txt >>>>>>>>>>>>>> >>>>>>>>>>>>>> # Number of low-b images >>>>>>>>>>>>>> # Must be specified if inputs are not DICOM >>>>>>>>>>>>>> # Default: Read from DICOM header >>>>>>>>>>>>>> # >>>>>>>>>>>>>> set nb0 = 1 >>>>>>>>>>>>>> >>>>>>>>>>>>>> # Perform registration-based B0-inhomogeneity compensation? >>>>>>>>>>>>>> # Default: 0 (no) >>>>>>>>>>>>>> # >>>>>>>>>>>>>> set dob0 = 0 >>>>>>>>>>>>>> >>>>>>>>>>>>>> # Input B0 field map magnitude DICOMs (file names relative to >>>>>>>>>>>>>> dcmroot) >>>>>>>>>>>>>> # Only used if dob0 = 1 >>>>>>>>>>>>>> # Default: None >>>>>>>>>>>>>> # >>>>>>>>>>>>>> #set b0mlist = (huey/fmag/XXX-1.dcm dewey/fmag/XXX-1.dcm >>>>>>>>>>>>>> louie/fmag/XXX-1.dcm) >>>>>>>>>>>>>> >>>>>>>>>>>>>> # Input B0 field map phase DICOMs (file names relative to >>>>>>>>>>>>>> dcmroot) >>>>>>>>>>>>>> # Only used if dob0 = 1 >>>>>>>>>>>>>> # Default: None >>>>>>>>>>>>>> # >>>>>>>>>>>>>> #set b0plist = (huey/fphas/XXX-1.dcm dewey/fphas/XXX-1.dcm >>>>>>>>>>>>>> louie/fphas/XXX-1.dcm) >>>>>>>>>>>>>> >>>>>>>>>>>>>> # Echo spacing for field mapping sequence (from sequence >>>>>>>>>>>>>> printout) >>>>>>>>>>>>>> # Only used if dob0 = 1 >>>>>>>>>>>>>> # Default: None >>>>>>>>>>>>>> # >>>>>>>>>>>>>> #set echospacing = 0.7 >>>>>>>>>>>>>> >>>>>>>>>>>>>> # Perform registration-based eddy-current compensation? >>>>>>>>>>>>>> # Default: 1 (yes) >>>>>>>>>>>>>> # >>>>>>>>>>>>>> set doeddy = 1 >>>>>>>>>>>>>> >>>>>>>>>>>>>> # Rotate diffusion gradient vectors to match eddy-current >>>>>>>>>>>>>> compensation? >>>>>>>>>>>>>> # Only used if doeddy = 1 >>>>>>>>>>>>>> # Default: 1 (yes) >>>>>>>>>>>>>> # >>>>>>>>>>>>>> set dorotbvecs = 1 >>>>>>>>>>>>>> >>>>>>>>>>>>>> # Fractional intensity threshold for BET mask extraction from >>>>>>>>>>>>>> low-b >>>>>>>>>>>>>> images >>>>>>>>>>>>>> # This mask is used only if usemaskanat = 0 >>>>>>>>>>>>>> # Default: 0.3 >>>>>>>>>>>>>> # >>>>>>>>>>>>>> set thrbet = 0.5 >>>>>>>>>>>>>> >>>>>>>>>>>>>> # Perform diffusion-to-T1 registration by flirt? >>>>>>>>>>>>>> # Default: 1 (yes) >>>>>>>>>>>>>> # >>>>>>>>>>>>>> set doregflt = 1 >>>>>>>>>>>>>> >>>>>>>>>>>>>> # Perform diffusion-to-T1 registration by bbregister? >>>>>>>>>>>>>> # Default: 0 (no) >>>>>>>>>>>>>> # >>>>>>>>>>>>>> set doregbbr = 0 >>>>>>>>>>>>>> >>>>>>>>>>>>>> # MNI template (the only option for inter-subject registration >>>>>>>>>>>>>> in >>>>>>>>>>>>>> this >>>>>>>>>>>>>> version) >>>>>>>>>>>>>> # Default: $FSLDIR/data/standard/MNI152_T1_1mm_brain.nii.gz >>>>>>>>>>>>>> # >>>>>>>>>>>>>> set mnitemp = $FSLDIR/data/standard/MNI152_T1_1mm_brain.nii.gz >>>>>>>>>>>>>> >>>>>>>>>>>>>> # Use brain mask extracted from T1 image instead of low-b >>>>>>>>>>>>>> diffusion >>>>>>>>>>>>>> image? >>>>>>>>>>>>>> # Has no effect if there is no T1 data >>>>>>>>>>>>>> # Default: 1 (yes) >>>>>>>>>>>>>> # >>>>>>>>>>>>>> set usemaskanat = 1 >>>>>>>>>>>>>> >>>>>>>>>>>>>> # Paths to reconstruct >>>>>>>>>>>>>> # Default: All paths in the atlas >>>>>>>>>>>>>> # >>>>>>>>>>>>>> set pathlist = ( lh.cst_AS rh.cst_AS \ >>>>>>>>>>>>>> lh.unc_AS rh.unc_AS \ >>>>>>>>>>>>>> lh.ilf_AS rh.ilf_AS \ >>>>>>>>>>>>>> fmajor_PP fminor_PP \ >>>>>>>>>>>>>> lh.atr_PP rh.atr_PP \ >>>>>>>>>>>>>> lh.ccg_PP rh.ccg_PP \ >>>>>>>>>>>>>> lh.cab_PP rh.cab_PP \ >>>>>>>>>>>>>> lh.slfp_PP rh.slfp_PP \ >>>>>>>>>>>>>> lh.slft_PP rh.slft_PP ) >>>>>>>>>>>>>> >>>>>>>>>>>>>> # Number of path control points >>>>>>>>>>>>>> # Default: 5 >>>>>>>>>>>>>> # >>>>>>>>>>>>>> set ncpts = 5 >>>>>>>>>>>>>> >>>>>>>>>>>>>> # List of training subjects >>>>>>>>>>>>>> # This text file lists the locations of training subject >>>>>>>>>>>>>> directories >>>>>>>>>>>>>> # Default: $FREESURFER_HOME/trctrain/trainlist.txt >>>>>>>>>>>>>> # >>>>>>>>>>>>>> set trainfile = $FREESURFER_HOME/trctrain/trainlist.txt >>>>>>>>>>>>>> >>>>>>>>>>>>>> # Use long (more descriptive) directory hierarchy for saving >>>>>>>>>>>>>> path >>>>>>>>>>>>>> distributions? >>>>>>>>>>>>>> # By default paths distributions are saved directly under >>>>>>>>>>>>>> $subjectname/dpath >>>>>>>>>>>>>> # Default: 0 (no) >>>>>>>>>>>>>> # >>>>>>>>>>>>>> set dopathsubdirs = 0 >>>>>>>>>>>>>> >>>>>>>>>>>>>> # Number of MCMC burn-in iterations >>>>>>>>>>>>>> # (Path samples drawn initially by MCMC algorithm and >>>>>>>>>>>>>> discarded) >>>>>>>>>>>>>> # Default: 200 >>>>>>>>>>>>>> # >>>>>>>>>>>>>> set nburnin = 200 >>>>>>>>>>>>>> >>>>>>>>>>>>>> # Number of MCMC iterations >>>>>>>>>>>>>> # (Path samples drawn by MCMC algorithm and used to estimate >>>>>>>>>>>>>> path >>>>>>>>>>>>>> distribution) >>>>>>>>>>>>>> # Default: 5000 >>>>>>>>>>>>>> # >>>>>>>>>>>>>> set nsample = 5000 >>>>>>>>>>>>>> >>>>>>>>>>>>>> # Frequency with which MCMC path samples are retained for path >>>>>>>>>>>>>> distribution >>>>>>>>>>>>>> # Default: 5 (keep every 5th sample) >>>>>>>>>>>>>> # >>>>>>>>>>>>>> set nkeep = 5 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If you believe this e-mail was sent to you in error >>>>>>>>>>>>> and >>>>>>>>>>>>> the >>>>>>>>>>>>> e-mail >>>>>>>>>>>>> contains patient information, please contact the Partners >>>>>>>>>>>>> Compliance >>>>>>>>>>>>> HelpLine at >>>>>>>>>>>>> http://www.partners.org/complianceline . If the e-mail was sent >>>>>>>>>>>>> to >>>>>>>>>>>>> you >>>>>>>>>>>>> in >>>>>>>>>>>>> error >>>>>>>>>>>>> but does not contain patient information, please contact the >>>>>>>>>>>>> sender >>>>>>>>>>>>> and >>>>>>>>>>>>> properly >>>>>>>>>>>>> dispose of the e-mail. >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>> >>>>>>>>> >>>>>>>> >>>>>>>> >>>>>>> >>>>>> >>>>>> >>>>> >>>> >>>> >>> >> >> > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
