Hi Charles, You could use the snapshots option with the QAtools. Alternatively, you can use the <volume>:structure=name_or_value along with the --screenshot option to take snapshots of just the cerebellum. A little scripting would be necessary. Eventually this will be integrated with the QAtools.
https://surfer.nmr.mgh.harvard.edu/fswiki/QATools -Louis On Mon, 7 Jan 2013, charles laidi wrote: > Dear freesurfers, > > I just finished cerebellar segmentation on almost 100 subjects. I have > read the usual checking procedure that should be performed on > freesurfer website. However I wasn't able to find if there is a > specific checking workflow that can be performed when freesurfer is > used for 100 / a lot of subjects. > For example FSL provides a tool called slicesdir that allows to check > segmentation faster. > Is there such a feature with freesurfer ? > What kind of checking would you recommend for cerebellar segmentation > on 100 subjects ? > > Thank you very much and happy new year ! > > Charles > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
