thanks doug, that's what i ended up doing. once i'm done, i might run it by you'll to make sure i'm not misinterpreting any of the files.
cheers, satra On Mon, Jan 7, 2013 at 12:51 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>wrote: > Hi Satra, I don't think we've ever compiled such a thing. Maybe just run > recon-all and then ls -lR :) > doug > > > On 01/05/2013 02:48 PM, Satrajit Ghosh wrote: > > hi folks, > > > > happy new year. > > > > we are trying to create an object model for the freesurfer directory. > > > > is there a function/script in freesurfer that would return me > > effectively something `ls -lR` but only the items that are mandatory > > for a subjects' directory? > > > > if not, is there a document that lists the relevant outputs along the > > lines of something like this: > > > > http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FEAT/UserGuide#FEAT_Output > > > > and if anybody is interested, here is our work in progress in > > cataloging freesurfer directory structure and stats (coming soon) in > > the w3c-prov model format. > > > > > http://nbviewer.ipython.org/urls/dl.dropbox.com/s/1ssv4i1dyraa46h/freesurfer_catalog.ipynb > > > > (the link doesn't have versioning yet - but will keep changing as we > > work on it) > > > > cheers, > > > > satra > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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