Freesurfer, I have been running a group of subjects through recon-all and some of the subjects are failing at the very beginning of the process and I am not sure why. The images look fine, but I keep getting the following error:
#@# Talairach Failure Detection Fri Dec 7 10:54:57 CST 2012 /Applications/freesurfer/subjects/PHY002/mri \n talairach_afd -T 0.005 -xfm transforms/talairach.xfm \n ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0013, pval=0.0000 < threshold=0.0050) INFO: Attempting MINC mritotal to perform Talairach align Do you know what could be causing this? I read that you can include the command –notal –check to skip this test, but how will this effect my data? If I run this command on the subjects that failed and combine their results with the subjects that worked will my group results be effected? Any help would be appreciated. I have attached one of the log files for a subject that failed. Thanks, Crystal
recon-all.error
Description: recon-all.error
recon-all.log
Description: recon-all.log
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