Great, glad it works!
On Mon, 14 Jan 2013, Cat Chong wrote:
Dear Anastasia, Thank you so much for your fast reply. I believe I found the pesky mistake in my dmrirc file.. I omitted a space in the last line set ncpts =5 once I fixed this to set ncpts = 5 and re-ran the command I no longer get this error message. Thank you very much, Catherine ____________________________________________________________________________ From: Anastasia Yendiki <ayend...@nmr.mgh.harvard.edu> To: Cat Chong <cavecreekcut...@yahoo.com> Cc: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu> Sent: Monday, January 14, 2013 10:04 AM Subject: Re: [Freesurfer] Tracula error? set: Variable name must begin with a letter Hi Cat - Can you please send along your dmrirc file? It's hard to tell without looking at it. a.y On Mon, 14 Jan 2013, Cat Chong wrote: > > Hello Experts: > > I am running the first pre-processing step in Tracula and come across the > error: > set: Variable name must begin with a letter. > > Below is an excerpt of the script which seems to be running fine. Did I make > a mistake in my > dmrirc_single_subject file? > Cheers, > Catherine > > fmris-mac-pro-2:8000_tracula fmri$ trac-all -prep -c > $SUBJECTS_DIR/dmrirc_single_subject > set: Variable name must begin with a letter. > INFO: SUBJECTS_DIR is /8000_tracula/ > INFO: Diffusion root is /8000_tracula//8000_tracula_out/ > Actual FREESURFER_HOME /Applications/freesurfer > trac-preproc -c > /8000_tracula//8000_tracula_out//8001_DTI/scripts/dmrirc.local -log > /8000_tracula//8000_tracula_out//8001_DTI/scripts/trac-all.log -cmd > /8000_tracula//8000_tracula_out//8001_DTI/scripts/trac-all.cmd > #------------------------------------- > /Applications/freesurfer//bin/trac-preproc > #------------------------------------- > #@# Image corrections Mon Jan 14 09:37:29 MST 2013 > mri_convert /8000_tracula//8001_DTI/IM-0006-0001.dcm > /8000_tracula//8000_tracula_out//8001_DTI/dmri/dwi_orig.nii.gz > mri_convert /8000_tracula//8001_DTI/IM-0006-0001.dcm > /8000_tracula//8000_tracula_out//8001_DTI/dmri/dwi_orig.nii.gz > $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ > reading from /8000_tracula//8001_DTI/IM-0006-0001.dcm... > Starting DICOMRead2() > dcmfile = /8000_tracula//8001_DTI/IM-0006-0001.dcm > dcmdir = /8000_tracula//8001_DTI > Ref Series No = 6 > > > the script continues to run ok. > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
