Hi Bruce, so you use the conformed and fixed ?h.orig during mris_make_surfaces on the .5mm data? Never thought of that.
Best, Falk -------- Original-Nachricht -------- > Datum: Wed, 16 Jan 2013 11:16:45 -0500 (EST) > Von: Bruce Fischl <fis...@nmr.mgh.harvard.edu> > An: "Falk Lüsebrink" <falk.lu...@gmx.net> > CC: freesurfer@nmr.mgh.harvard.edu > Betreff: Re: [Freesurfer] Speeding up mris_fix_topology > Hi Falk > > we usually don't process the .5mm data directly. Instead we "conform" it > to > 1mm iso, recon it, then run mris_make_surfaces posthoc directly on the > .5mm > data to nudge the surfaces around to agree with it. > > Parallelizing mris_fix_topology is certainly possible if only we had an > extra engineer to work on it.... > > cheers > Bruce > > > On Wed, 16 Jan 2013, "Falk Lüsebrink" wrote: > > > Hello all, > > > > I'm processing some high resolution data with an isotropic resolution of > 0.5mm and I was wondering if it would be possible to speed up > mris_fix_topology somehow. Due to the increased number of vertices and also > increased > number of defects this stage takes incredibly long (e.g. lots of days). > > > > It would be nice if the defects are handled separately of each other to > parallize the process. Maybe by first estimating and specifying the number > of defects. Then by being able to run multiple instances of > mris_fix_topology for the same subjects correcting one or a range of defects > each. > > > > Best, > > Falk > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
