---------------------------- Original Message ---------------------------- Subject: Re: [Freesurfer] Error with mri_vol2surf From: "Shantanu Ghosh" <shant...@nmr.mgh.harvard.edu> Date: Wed, January 16, 2013 2:05 pm To: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> --------------------------------------------------------------------------
Hi Doug, problem solved. I used the command: mri_vol2surf --projfrac 0.5 --src ./volstat/AC066-rh-volume.mgh \ --out ./volstat/AC066.volumefile.mgh --hemi rh --regheader 002901 \ --float2int tkregister --fixtkreg --trgsubject fsaverage Thanks Shantanu On Wed, January 16, 2013 11:02 am, Douglas N Greve wrote: > Does /volstat/AC066-rh-volume.mgh exist? > what happens when you run > ls -l /volstat/AC066-rh-volume.mgh > > doug > > On 01/16/2013 11:00 AM, Shantanu Ghosh wrote: >> Hi Freesurfers, >> >> Sorry if this is a newbie question. I receive the following error when I >> use mri_vol2surf to assign values from a subject volume file to each >> surface vertex and cant fix this ... >> >> mris_preproc command exits w/o errors in a previous step: >> mris_preproc --s AC066 --target fsaverage --hemi rh --meas volume --out >> volstat/AC066-rh-volume.mgh >> >> >> $ mri_vol2surf --projfrac 0.5 --src /volstat/AC066-rh-volume.mgh --out >> /volstat/AC066.volumefile.mgh --srcreg register.dat --hemi rh >> --float2int >> tkregister --fixtkreg >> srcvol = /volstat/AC066-rh-volume.mgh >> srcreg = register.dat >> srcregold = 0 >> srcwarp unspecified >> surf = white >> hemi = rh >> ProjFrac = 0.5 >> thickness = thickness >> reshape = 0 >> interp = nearest >> float2int = tkregister >> GetProjMax = 0 >> INFO: float2int on the command line (2) overrides that >> in the registration file (0). >> INFO: float2int code = 2 >> mghRead(/volstat/AC066-rh-volume.mgh, -1): could not open file >> ERROR: could not read /volstat/AC066-rh-volume.mgh as type 3 >> >> Thanks for all the help. >> Shantanu >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Shantanu Ghosh, Ph.D. Harvard Medical School & Massachusetts General Hospital Martinos Center for Biomedical Imaging -- Shantanu Ghosh, Ph.D. Harvard Medical School & Massachusetts General Hospital Martinos Center for Biomedical Imaging _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
