it definitely won't correct them (otherwise we would have included it in
recon-all already). We are correcting them, just not the right way (e.g.
cutting instead of filling or visa-versa)
cheers
Bruce
On Mon, 11 Feb 2013, Kristina Nalbandian wrote:
Thank you for the reply!
What is the command for running defect-seg? Will this only help me visualize
the defects or will it
correct them as well?
Many thanks
On Fri, Feb 8, 2013 at 3:25 PM, Douglas Greve <[email protected]> wrote:
Kristina, you can also run defect-seg to create aseg segmentation of the
defects. Follow
the instructions in the --help to visualize. Look in that region for
defects.
doug
On 2/8/13 5:56 PM, Bruce Fischl wrote:
Hi Kristina
I would guess you have a topological defect that is being fixed
incorrectly. If you
upload the subject I'm happy to take a look (in between rounds of
shoveling)
Bruce
On Fri, 8 Feb 2013, Kristina Nalbandian wrote:
Hello,
I am trying to run cortical thickness on a few scans. After the
initial
recon-all -all command not all regions of grey and white matter were
included. I have attached a picture of the problem (the right side
temporal
lobe is not included, but the the left side is). I tried adding
control
points and re-running the process with the command "-autorecon-all
-autorecon2-cp -autorecon3 -subjid subject name" but I do not get a
very
improved result. If there anything else I can try?
Thank you for all your help,
Kristina Nalbandyan
Neuroscience Undergraduate Interdepartmental Program, UCLA
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