it also looks like your image is strangely squashed. DId you process the dicoms right from the scanner? I wonder whether your voxel sizes were incorrect On Tue, 19 Feb 2013, Louis Nicholas Vinke wrote:
> Hi Deirdre, > It looks like your skullstrip failed and left a lot of the neck which was > mistaken for the cerebellum. The actual cerebellum was incorporated into > your surfaces. Take a look at the wiki page below for how you might go > about fixing this case. > > https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/SkullStripFix > > -Louis > > On Tue, 19 Feb 2013, Deirdre O Shea wrote: > >> Dear FreeSurfer community, >> >> After running FreeSurfer on almost a hundred subjects, I have encountered >> just two that have strange surface reconstructions. I have re-ran them from >> scratch hoping it would rectify this problem but to no avail. I have not >> done anything different with these subjects and the rest turned out okay. I >> have attached an image to show you what I mean. Any suggestions about why >> this happens and how it can be fixed would be great! >> >> Thanks in advance, >> >> Deirdre >> >> > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
