Thanks Nick and Anil! I tried with the Bert data set in its original location, and got a different kind of error:
ERROR: talairach_afd::Load_xfm(): could not parse transforms/talairach.xfm Manual Talairach alignment may be necessary, or include the -notal-check flag to skip this test, making sure the -notal-check flag follows -all or -autorecon1 in the command string. I am now trying to run recon-all through FMRIB (FSL)... Tudor On 18 February 2013 00:25, Nick Schmansky <ni...@nmr.mgh.harvard.edu> wrote: > Thanks Anil! Tudor, sounds like you should give this a try. > > I'm re-posting this to the freesurfer list to archive it. > > Nick > > > > > > > Hi > > > > I am having the same problem but I have an idea where it's occurring. > > > > I have Windows XP Virtualbox Ubuntu Install where I have an windows share > > on the Linux using shared folder from windows > > > > When I use the shared folder it gives this error > > When I use the Bert data set in its original location subjects dir it > > works fine > > When I transfer a new subject in virtualuser Freesurfer subjects folder > > it's works fine > > I ran it with -debug command to check and I thinks nu_ estimate makes > some > > temp folders which gets messed up when you use shared folders. > > So to avoid this error transfer the subjects folder to virtualuser > subject > > folder rather than using -sd command to specify a shared folder > > > > Sincerely > > > > Anil > > > > > > > > > > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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