Daniel, Are you using your Mac to run recon-all? I'm curious about the run-times you are seeing. Others have had very long run times, which I cannot explain. I'd expect about 24 hour runtime, possible half that or less, on a current Macbook Pro.
Nick On Tue, 2013-02-26 at 12:51 -0500, Daniel Cole wrote: > I was holing out on an analysis before rebooting but that seemed to do > the trick! Thanks all! > > > Daniel > > > On Mon, Feb 25, 2013 at 5:58 PM, Nick Schmansky > <ni...@nmr.mgh.harvard.edu> wrote: > have you rebooted since installing XQuartz? i've found a > reboot is > necessary to get Terminal to open up again. > > N. > > > On Mon, 2013-02-25 at 17:07 -0500, Daniel Cole wrote: > > Hi Zeke, > > Thank you for the advice. I have Mac OS X Version 10.7.5. > > I checked to see if XQuartz is installed and it is. I > reinstalled it > > to be sure but I'm still running into the same problems. Do > you (or > > does anyone else) have other ideas about what could be > causing this > > issue? > > > > Thanks, > > Daniel > > > > > > On Thu, Feb 21, 2013 at 5:22 PM, > <zkauf...@nmr.mgh.harvard.edu> wrote: > > Daniel, > > > > What operating system are you on? If your using > MacOS, you > > must have > > XQuartz installed in order to use the the > > Tkregister2/Tksurfer/Tkmedit > > tools. Check the Application->Utilities folder to > see if its > > already > > installed. If not, you can download it from here: > > > > http://xquartz.macosforge.org/landing/ > > > > If your are on Linux than I am sorry but someone > else will > > have to chime > > in with a potential solution. > > > > -Zeke > > > > > > > Hello freesurfers, > > > I just ran registration of my functional images > and am > > trying to visualize > > > the registration for assessment. However, when I > use the > > commands > > > "tkregister-sess -s $SESSIONNAME -d > $SESSIONDIRECTORY -fsd > > bold -funcstem > > > f" > > > or > > > > > > "tkregister2 --targ T1.mgz --fstarg --s $SUBJECTID > --surf > > --mov > > > $FUNCTIONAL_MRI --reg $REG_DAT --plane sag > --movbright > > $MYBRIGHTNESS" > > > > > > the command gets stuck on "Opening window > SUBJECT01". > > > > > > > > > I've also tried just opening tksurfer and tkmedit > but the > > terminal > > > produces > > > no output/windows opening and simply freezes. > > > > > > Any ideas to why this could be occurring? I've > let it sit > > at this stage > > > for multiple hours without anything popping up and > without > > any errors. > > > > > > > > > Thanks! > > > > > > Daniel > > > > > > > > > -- > > > Daniel Cole > > > University of Rochester > > > Brain and Cognitive Sciences > > > dcol...@u.rochester.edu > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > The information in this e-mail is intended only for > the person > > to whom it is > > addressed. If you believe this e-mail was sent to > you in error > > and the e-mail > > contains patient information, please contact the > Partners > > Compliance HelpLine at > > http://www.partners.org/complianceline . If the > e-mail was > > sent to you in error > > but does not contain patient information, please > contact the > > sender and properly > > dispose of the e-mail. > > > > > > > > > > > > -- > > Daniel Cole > > University of Rochester > > Brain and Cognitive Sciences > > dcol...@u.rochester.edu > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > -- > Daniel Cole > University of Rochester > Brain and Cognitive Sciences > dcol...@u.rochester.edu _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
