Hi I got an error -lobesStrict unknown. I am running mri_annotation2label version stable5.
Is there a workaround? On Feb 28, 2013, at 10:47 AM, Rudolph Pienaar wrote: > After a conventional FS run you can do the following: > > $>mri_annotation2label --subject <subj> --hemi <hemi> --lobesStrict > <hemi>.lobesStrict.annot > > Which will create an annotation file <hemi>.lobesStrict.annot containing the > lobar labels. To extract these into their own individual label files, do > > $>mri_annotation2label --subject <subj> --hemi <hemi> --annotation > lobesStrict --outdir <subj>/label > > This will populate the <subj>/label directory with files: > > <hemi>.frontal.label > <hemi>.parietal.label > <hemi>.temporal.label > <hemi>.occiptal.label > <hemi>.cingulate.label > > So, to be pendantic, if you want the lobar labels for the left hemisphere of > a subject called 'sub1', you would > > $>mri_annotation2label --subject sub1 --hemi lh --lobesStrict > lh.lobesStrict.annot > $>mri_annotation2label --subject sub1 --hemi lh --annotation lobesStrict > --outdir sub1/label > > HTH > -=R > > > On Thu Feb 28 09:24:58 2013, Sudhin A. Shah wrote: >> Hello, >> >> Is there a lookup table I can use to convert free surfer labels to lobes? >> Either label nos (1006, 2006 etc) or label names (ctx-rh-superiorfrontal)? I >> have 86 labels and want an easy way to differentiate them into the >> corresponding lobes. >> >> Thanks, >> S >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > > > -- > Rudolph Pienaar, M.Eng, D.Eng / email: rudo...@nmr.mgh.harvard.edu > MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging > 149 (2301) 13th Street, Charlestown, MA 02129 USA > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
