Dear Freesurfers, I am now encountering a new error with the Hinds V1 procedure:
I am still using the same version (5.1.0) and nothing has changed, except that I have been doing some cross-hemispheric registration for some of the subjects (not this one). using inflated surface for initial alignment using n_averages = 4096 l_dist = 10.000 using l_parea = 1.000 $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ $Id: mrisurf.c,v 1.693.2.2 2011/04/27 19:21:05 nicks Exp $ reading surface from /Applications/freesurfer/subjects/t05/surf/lh.sphere... reading template parameterization from /Applications/freesurfer/subjects/V1_average/label/lh.v1.invivo.tif... mrisReadTriangleFile(/Applications/freesurfer/subjects/t05/surf/lh.smoothwm): surface doesn't match /Applications/freesurfer/subjects/t05/surf/lh.sphere Any suggestions? All the best, Anders 2012/6/13 Anders Hougaard <[email protected]> > Hi Bruce, > > That actually seems to do the trick. Thank you very much! > > Best, > Anders > > > 2012/6/12 Bruce Fischl <[email protected]> > >> try symlinking the ?h.white surfaces to the ?h.smoothwm and see if that >> solves your problem >> >> cheers >> Bruce >> >> On Tue, 12 Jun 2012, Anders Hougaard wrote: >> >> Dear Dr. Bock, >>> I get the same error in FS 5.1.0 when running recon-all -s <subject> >>> -label_v1. >>> >>> Did you find a solution? >>> >>> Best regards, >>> >>> Anders Hougaard, MD >>> Danish Headache Center >>> Dept. of Neurology >>> Glostrup Hospital >>> Copenhagen >>> Denmark >>> >>> 2011/11/11 Andrew Bock <[email protected]> >>> Hello, >>> >>> I am having a similar problem to one described on the freesurfer >>> mail archive, where I receive the following error when trying to >>> identify V1 using the Hinds method (i.e. recon-all -s <subject> >>> -label_v1): >>> >>> processing subject V1_average... >>> MRISreadVertexPosition(white): could not open file >>> /usr/local/freesurfer/**subjects/V1_average/surf/rh.**white >>> No such file or directory >>> MRISreadOriginalProperties: could not read surface file white >>> No such file or directory >>> could not read surface positions from white >>> No such file or directory >>> >>> >>> As Prof. Krish Singh indicated in July, it appears the problem >>> occurs when trying to open rh.white (or lh.white) from the surf >>> subdirectory in V1_average, which doesn't exist. >>> >>> I have run recon-all -s <subject> -make all, but it returns >>> "make: Nothing to be done for `all'." >>> >>> Any help you can provide would be greatly appreciated! >>> >>> Thanks in advance, >>> >>> Andrew >>> >>> -- >>> Andrew Bock, Ph.D. >>> Department of Psychology >>> University of Washington >>> Seattle, WA 98195 >>> Tel: 206.543.3817 >>> Fax: 206.685.3157 >>> [email protected] >>> >>> ______________________________**_________________ >>> Freesurfer mailing list >>> [email protected] >>> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>> >>> >>> The information in this e-mail is intended only for the person to whom >>> it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >>> If the e-mail was sent to you >>> in error >>> but does not contain patient information, please contact the sender >>> and properly >>> dispose of the e-mail. >>> >>> >>> >>> >
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